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Supplemental Information

Recombination fraction and LOD scores for each pair of markers

Markers are in the same order as in the linkage map of Figure 4; LOD scores are in the upper triangle and recombination fraction in the lower one. Colours represent a gradient from low LOD score and great recombination fraction (blue) to large LOD scores and small recombination fraction (red).

DOI: 10.7287/peerj.preprints.861v2/supp-1

Profiles of LOD scores for linkage groups with QTLs detected

Abscises are marker position along the linkage group. Red lines are detection threshold corresponding to a type 1 error of 5%, and green rectangles correspond to the 2-LOD confidence region

DOI: 10.7287/peerj.preprints.861v2/supp-2

Information about species used for the PCA performed on the genus

H: hummingbird specialist, G: generalist; (+1) correspond to parental individuals of the hybrid population but were not used to do the PCA

DOI: 10.7287/peerj.preprints.861v2/supp-3

Scripts and data used for the analyses

DOI: 10.7287/peerj.preprints.861v2/supp-4

Additional Information

Competing Interests

The authors declare they have no competing interests.

Author Contributions

Hermine Alexandre conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Justine Vrignaud performed the experiments, reviewed drafts of the paper.

Brigitte Mangin contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper.

Simon Joly conceived and designed the experiments, performed the experiments, contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper.

DNA Deposition

The following information was supplied regarding the deposition of DNA sequences:

Accession numbers will be available upon acceptance of the manuscript.

Funding

This study was financially supported by an NSERC grant to SJ, a Quebec Centre for Biodiversity Science (QCBS) seed grant to SJ, and a QCBS excellence award to HA. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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