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Optimizing taxonomic classification of marker gene sequences

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RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @PeerJPreprints: Preprint: Optimizing taxonomic classification of marker gene sequences https://t.co/P5WXosMKMc https://t.co/OXD8383tsQ
Preprint: Optimizing taxonomic classification of marker gene sequences https://t.co/P5WXosMKMc https://t.co/OXD8383tsQ
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
85 days ago
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
85 days ago
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
RT @gregcaporaso: Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https…
Our preprint, Optimizing tax classification of marker gene seqs, is live. Inc benchmarks of new @qiime2 classifiers https://t.co/vM6KBgCLxJ
Optimizing taxonomic classification of marker gene sequences https://t.co/pjP9W9IykY
86 days ago
Optimizing taxonomic classification of marker gene sequences https://t.co/0uTsZC64Ti
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Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Nicholas A Bokulich conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Benjamin D Kaehler conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Jai Ram Rideout contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Matthew Dillon contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Evan Bolyen contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Rob Knight conceived and designed the experiments, contributed reagents/materials/analysis tools, reviewed drafts of the paper.

Gavin A. Huttley conceived and designed the experiments, contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper.

J. Gregory Caporaso conceived and designed the experiments, contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

All code is available on GitHub.

https://github.com/qiime2/q2-feature-classifier

https://github.com/caporaso-lab/tax-credit

Funding

This work was funded in part by National Science Foundation award 1565100 to JGC and RK, awards from the Alfred P. Sloan Foundation to JGC and RK, and National Health and Medical Research Council of Australia award APP1085372 to GAH and JGC. These funding bodies had no role in the design of the study, the collection, analysis, or interpretation of data, or in writing the manuscript.


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