Using the Paleobiology Database and MorphoBank to facilitate collaborative research and data archival
- Published
- Accepted
- Subject Areas
- Evolutionary Studies, Paleontology
- Keywords
- open data, web applications, replicability
- Copyright
- © 2019 Hopkins
- Licence
- This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Preprints) and either DOI or URL of the article must be cited.
- Cite this article
- 2019. Using the Paleobiology Database and MorphoBank to facilitate collaborative research and data archival. PeerJ Preprints 7:e27971v1 https://doi.org/10.7287/peerj.preprints.27971v1
Abstract
The internet has made it possible to share and store large quantities of data, and as a result, there is an increasing imperative to make data easily accessible and results reproducible. This has been facilitated by the proliferation of online tools available for archiving and sharing data. In this talk I will describe two databases that are structured in different ways but provide useful platforms for collaboration, reproducibility, and data archival. The first is the Paleobiology Database (PBDB), which is a public resource for paleontological data in support of global, collection-based occurrence and taxonomic data for organisms of all geologic ages. I will give a brief history of the PBDB; describe how data is contributed; describe data services for browsing data, downloading data, and the independent development of analytical and visualization tools; and describe how to make research based on data from the PBDB replicable. The second is MorphoBank, which is a project-based platform for organizing and archiving morphological data and images affiliated with that data, and whose primary use has been for building morphological matrices for use in phylogenetic and disparity analyses. I will give a brief history of MorphoBank; describe tools for data creation, editing, and export; and describe how the platform is best used for replicability and data archival during the review process and after publication. Finally, I will discuss the future of both databases, focusing particularly on initiatives for connecting each with other databases and with the R Project for Statistical Computing, as well as educational resources and funding.
Author Comment
This abstract was accepted for the Open Data and Analysis: from morphology to evolutionary patterns.