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Genes of the Pig, Sus scrofa, reconstructed with EvidentialGene

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Genes of the Pig, Sus scrofa, reconstructed with EvidentialGene https://t.co/NZttLR0fxO The pig is a well studied model animal of biomedical and agricultural importance. Genes of this species, Sus scrofa, are known from experiments and predictions, and collected at the…
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Supplemental Information

pig18evg_datadesc.pages Conserved vertebrate genes recovered in Pig Evigene vs NCBI gene sets, as computed with vertebrate conserved genes of OrthoDB

pig18evg_datadesc.pages Columns include gene ids of BUSCO_ID, Evigene_ID, and NCBI RefSeq ID. Other columns: Cmp, the qualitative comparison (evgain, same, evloss) of alignment difference; Diff, numeric difference in alignment score to conserved protein; dEvg-Ncb, the two alignment scores; BC, the BUSCO complete/fragment/missing quality score; and Product_Name, the vertebrate protein product.

DOI: 10.7287/peerj.preprints.27191v1/supp-1

pig18evg_datadesc.pages Human genes recovered in Pig Evigene vs NCBI gene sets, as computed with human and pig RefSeq and Evigene proteins and NCBI BLASTP

pig18evg_datadesc.pages Columns include gene ids for Human RefSeq ID, Evigene_pig_ID, NCBI_pig_ID; AAsize, human protein size; EvAlign, NcAlign, alignment scores to Evigene and NCBI proteins; DiffA, difference in alignments; and Human_Gene_Name.

DOI: 10.7287/peerj.preprints.27191v1/supp-2

Additional Information

Competing Interests

The author declares that they have no competing interests.

Author Contributions

Donald G Gilbert conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft, all other.

Data Deposition

The following information was supplied regarding data availability:

An open access, persistent repository of this annotated pig gene data set is at https://scholarworks.iu.edu/ with digital object identifier DOI:10.5967/K8DZ06G3 ;

Transcriptome Shotgun Assembly accession is DQIR01000000 at DDBJ/EMBL/GenBank, BioProject PRJNA480168, for these annotated transcript sequences (publication required for release);

Data and software are also at

https://sourceforge.net/projects/evidentialgene/files/evigene_pig_susscr2018/

and http://eugenes.org/EvidentialGene/vertebrates/pig/pig18evigene/

Funding

The author received no funding for this work.


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