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Supplemental Information

Biofouling correction for the LISST-Holo

DOI: 10.7287/peerj.preprints.26961v1/supp-1

Hologram fouling comparison

(A) clean hologram early in mission (image 004-0973; 6/14/15 2:54), (B) dirty hologram late in mission (image 004-9029), note the extensive background refraction patterns caused by fouling. (C) Batch processed (image 004-0973: 10/27/15 19:57) (D) Batch processed (image 004-0973; 6/14/15 02:54).

DOI: 10.7287/peerj.preprints.26961v1/supp-2

Biofouling corrections and impact on volume calculations

(A) Total biovolume reported by the LISST-Holo software (grey line) and corrected biovolume after background removal (black line). (B) Percentage of biovolume removed from the images over time. Vertical dotted lines are endpoints of the background averaging window (see text for details).

DOI: 10.7287/peerj.preprints.26961v1/supp-3

Images from the Canon G10 downward facing camera illustrating biofouling buildup

(A) IMG_20150701220016, 1 July 2015 1200 local time. (B) IMG_20150823220014 23 Aug. 2015 1200 local time. This image illustrates an apparent accumulation of marine aggregates. (C) IMG 20150920170016. 21 Sept. 2015 0700 local time. (D) IMG_201510312200 31 Oct. 2015 1200 local time.

DOI: 10.7287/peerj.preprints.26961v1/supp-4

LISST-Holo sampling chamber and camera

(A) Looking into the sampling chamber. Corrosion is evident as a yellow-white material on the lower left of the camera. Note that it does not extend into the active optical sampling area. No macroscopic fouling is evident. (B) close up of corrosion after LISST-Holo was removed from the tow body. (C) Laser optical window noting no corrosion or macroscopic fouling.

DOI: 10.7287/peerj.preprints.26961v1/supp-5

Hemiaulus snowstorm observed by divers on 31 Aug. 2003 in the central N. Pacific gyre

(A) The arrow indicates a Rhizosolenia mat. The remainder of the flocs were Hemiaulus aggregates (B) Stereoscope microgaphy of a Hemiaulus aggregate. Figure from Villareal et al (2011).

DOI: 10.7287/peerj.preprints.26961v1/supp-6

PhytoFlash diel rhythms immediately before the PhytoFlash failure in early September

Fv:Fmvalues showed a normal diel rhythm (nocturnal maxima; diurnal minima) up to 1 September 2015. At this time, both the Fmand Fo used to calculated this value began a fatal upward drift that was not reflective of ambient chlorophyll concentrations from the satellite data. The values exceeded previously observed values by a factor of 3-4 until the instrument shut down and could not be restarted. Data after mid-day 1 Sept. is considered compromised and not useable for Fe-index determination. It is indicated on Fig 9b as the asterisked points.

DOI: 10.7287/peerj.preprints.26961v1/supp-7

Figure permission statement

DOI: 10.7287/peerj.preprints.26961v1/supp-9

Additional Information

Competing Interests

The authors declare that they have no competing interests. Liquid Robotics provided a cash grant, 6 months of Wave Glider time, and technical assistance for this project. They have not seen or commented on the data or the manuscript.

Author Contributions

Emily E Anderson performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Cara Wilson conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Anthony H Knap contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft, provided expertise in integrating sensors into the vehicle.

Tracy A Villareal conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Data Deposition

The following information was supplied regarding data availability:

1. Biological and Chemical Oceanography Data Management Office (BCO-DMO)

2. 505589

3. https://www.bco-dmo.org/project/505589

Funding

This work was funded by Liquid Robotics, a Boeing company through a cash grant, glider time, and technical assistance. In addition, this work was supported by the National Science Foundation award OCE 1430048 and 1537546. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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