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Supplemental Information

BLASTP identified similar chains to the S.punctatus opsin in PDB

DOI: 10.7287/peerj.preprints.2397v2/supp-1

I-TASSER identified similar templates in PDB

DOI: 10.7287/peerj.preprints.2397v2/supp-2

Additional information about ligands and energetics in docking simulations with the S. punctatus and T. pacificus structures

DOI: 10.7287/peerj.preprints.2397v2/supp-3

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Steven R Ahrendt conceived and designed the experiments, performed the experiments, analyzed the data, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Edgar Mauricio Medina conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper.

Chia-en A Chang analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper.

Jason E Stajich conceived and designed the experiments, analyzed the data, wrote the paper, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

github site contains code and models from this project

https://github.com/stajichlab/chytropsin and is also captured in an archived release doi: 10.5281/zenodo.259519

Funding

Jason E Stajich and Steven R Ahrendt were supported by funds from a grant from Alfred P. Sloan Foundation to J.ES., initial complement funds to J.E.S from the University of California-Riverside College of Agriculture and Natural Sciences, and USDA National Institute of Food and Agriculture Hatch project CA-R-PPA-5062-H. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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