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July 2016

Table of Contents - PeerJ Preprints

July 14, 2016 - Version: 2

Determining virus-host interactions and glycerol metabolism profiles in geographically diverse solar salterns with metagenomics

Abraham G Moller, Chun Liang

https://doi.org/10.7287/peerj.preprints.2106v2

July 1, 2016 - Version: 1

The evolution of logic circuits for the purpose of protein contact map prediction

Samuel D Chapman, Christoph Adami, Claus O Wilke, Dukka B KC

https://doi.org/10.7287/peerj.preprints.2197v1

July 20, 2016 - Version: 1

Computational characterization and epitope prediction for Bet-v1 like protein of Cannabis sativa

Zarrin Basharat

https://doi.org/10.7287/peerj.preprints.2305v1

July 11, 2016 - Version: 1

EvoPER -- An R package for applying evolutionary computation methods in the parameter estimation of individual-based models implemented in Repast

Antonio Prestes García, Alfonso Rodríguez-Patón

https://doi.org/10.7287/peerj.preprints.2279v1

July 1, 2016 - Version: 1

Learning protein folding and evolution with a snake puzzle

Gonzalo S Nido, Ludovica Bachschmid-Romano, Ugo Bastolla, Alberto Pascual-García

https://doi.org/10.7287/peerj.preprints.2201v1

July 3, 2016 - Version: 1

Ten simple rules for writing a comparative software review

Amy Beeston, Larisa Blazic, Neil Chue Hong, Richard Domander, Ross Mounce, Robin T Wilson

https://doi.org/10.7287/peerj.preprints.2221v1

July 2, 2016 - Version: 1

Standard codon substitution models overestimate purifying selection for non-stationary data

Benjamin D Kaehler, Von Bing Yap, Gavin A Huttley

https://doi.org/10.7287/peerj.preprints.2218v1

July 6, 2016 - Version: 1

Natural compounds as potential PI3K-AKT1 signaling pathway inhibitors by means of pharmacophore modeling

Serena Dotolo, Angelo Gaeta, Angelo Facchiano

https://doi.org/10.7287/peerj.preprints.2254v1

July 19, 2016 - Version: 1

A cellular automata to simulate the growth and death of a cell culture

Giuseppe Guerrisi, Deborah Giordano, Anna Marabotti, Giancarlo Raiconi, Roberto Tagliaferri

https://doi.org/10.7287/peerj.preprints.2301v1

July 2, 2016 - Version: 1

IVaCS: an Integrated Variant Calling System

Matteo Chiara, Giovanni Chillemi, Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziano Flati, Silvia Gioiosa, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò

https://doi.org/10.7287/peerj.preprints.2213v1

July 18, 2016 - Version: 1

Conserved domain and structure analysis of a putative polyphosphate kinase from Buruli ulcer causing bacterium

Zarrin Basharat

https://doi.org/10.7287/peerj.preprints.2296v1

July 8, 2016 - Version: 1

Analysis of the interactions of a novel cephalosporin derivative with its potential targets penicillin-binding proteins from different sources using a covalent docking approac

Anna Verdino, Margherita De Rosa, Annunziata Soriente, Anna Marabotti

https://doi.org/10.7287/peerj.preprints.2270v1

July 2, 2016 - Version: 1

BioPaxCOMP: an efficient system for integrating, compressing, and querying BioPAX

Giuseppe Agapito, Andrea Greco, Mario Cannataro

https://doi.org/10.7287/peerj.preprints.2210v1

July 2, 2016 - Version: 1

Investigating the opening mechanism of topoisomerase I B in complex with DNA by means of metadynamics

Blasco Morozzo della Rocca, Andrea Coletta, Federico Iacovelli, Alessandro Desideri

https://doi.org/10.7287/peerj.preprints.2217v1

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