PeerJ Author & Reviewer

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Dimitrios Vlachakis

PeerJ Author & Reviewer

Summary

Please visit www.geneticslab.gr to find out about my group

Bioinformatics Genetics Medical Genetics Molecular Biology

Editing Journals

Past or current institution affiliations

Agricultural University of Athens

University of Patras

Work details

Assistant Professor

Agricultural University of Athens

June 2017

Genetics Lab, Biotechnology Department

For more info on my group, please visit: www.geneticslab.gr

Websites

PeerJ Contributions

November 5, 2020

An updated evolutionary study of the Notch family reveals a new ancient origin and novel invariable motifs as potential pharmacological targets

Dimitrios Vlachakis, Louis Papageorgiou, Ariadne Papadaki, Maria Georga, Sofia Kossida, Elias Eliopoulos

https://doi.org/10.7717/peerj.10334 PubMed 33194454

May 4, 2018

EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation

Afshine Amidi, Shervine Amidi, Dimitrios Vlachakis, Vasileios Megalooikonomou, Nikos Paragios, Evangelia I. Zacharaki

https://doi.org/10.7717/peerj.4750 PubMed 29740518

March 29, 2017

Automatic single- and multi-label enzymatic function prediction by machine learning

Shervine Amidi, Afshine Amidi, Dimitrios Vlachakis, Nikos Paragios, Evangelia I. Zacharaki

https://doi.org/10.7717/peerj.3095 PubMed 28367366

March 1, 2017

Genetic and structural study of DNA-directed RNA polymerase II of Trypanosoma brucei, towards the designing of novel antiparasitic agents

Louis Papageorgiou, Vasileios Megalooikonomou, Dimitrios Vlachakis

https://doi.org/10.7717/peerj.3061 PubMed 28265521

January 13, 2015

DrugOn: a fully integrated pharmacophore modeling and structure optimization toolkit

Dimitrios Vlachakis, Paraskevas Fakourelis, Vasileios Megalooikonomou, Christos Makris, Sophia Kossida

https://doi.org/10.7717/peerj.725 PubMed 25648563

November 6, 2014

Structural models for the design of novel antiviral agents against Greek Goat Encephalitis

Louis Papageorgiou, Styliani Loukatou, Vassiliki Lila Koumandou, Wojciech Makałowski, Vasileios Megalooikonomou, Dimitrios Vlachakis, Sophia Kossida

https://doi.org/10.7717/peerj.664 PubMed 25392762

October 22, 2013

Protein signatures using electrostatic molecular surfaces in harmonic space

C. Sofia Carvalho, Dimitrios Vlachakis, Georgia Tsiliki, Vasileios Megalooikonomou, Sophia Kossida

https://doi.org/10.7717/peerj.185 PubMed 24167780

June 11, 2013

Molecular modeling and pharmacophore elucidation study of the Classical Swine Fever virus helicase as a promising pharmacological target

Dimitrios Vlachakis, Sophia Kossida

https://doi.org/10.7717/peerj.85 PubMed 23781407

May 7, 2013

A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV helicase

Dimitrios Vlachakis, Vassiliki Lila Koumandou, Sophia Kossida

https://doi.org/10.7717/peerj.74 PubMed 23678398

February 5, 2017 - Version: 1

Genetic and structural study of DNA-directed RNA polymerase II of Trypanosoma brucei, towards the designing of novel antiparasitic agents

Louis Papageorgiou, Vasileios Megalooikonomou, Dimitrios Vlachakis

https://doi.org/10.7287/peerj.preprints.2775v1

March 20, 2015 - Version: 1

Integrating bioinformatics tools to investigate protein phosphorylation

Dimitrios Vlachakis, Elena Bencurova, Mangesh Bhide, Sophia Kossida

https://doi.org/10.7287/peerj.preprints.916v1

December 27, 2014 - Version: 1

Understanding of emotions and cardiovascular related diseases

Dimitrios Vlachakis, Chrisanthy Vlachakis

https://doi.org/10.7287/peerj.preprints.761v1

December 5, 2014 - Version: 1

DrugOn: a fully integrated pharmacophore modeling and structure optimization toolkit

Dimitrios Vlachakis, Paraskevas Fakourelis, Christos Makris, Sophia Kossida

https://doi.org/10.7287/peerj.preprints.668v1

October 14, 2014 - Version: 1

Prevalence of disordered eating attitudes in young adults

Dimitrios Vlachakis, Chrisanthy Vlachakis

https://doi.org/10.7287/peerj.preprints.538v1

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

October 12, 2020

Mutations of SARS-CoV-2 nsp14 exhibit strong association with increased genome-wide mutation load

Doğa Eskier, Aslı Suner, Yavuz Oktay, Gökhan Karakülah

https://doi.org/10.7717/peerj.10181 PubMed 33083157

September 15, 2015

Integrated probability of coronary heart disease subject to the −308 tumor necrosis factor-alpha SNP: a Bayesian meta-analysis

C. Sofia Carvalho

https://doi.org/10.7717/peerj.1236 PubMed 26401451

1 Answer

Which is the down threshold for conventional homology modelling?