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Dimitrios Vlachakis
PeerJ Author & Reviewer
1,440 Points

Contributions by role

Author 1,180
Preprint Author 175
Reviewer 85
Comment 1

Contributions by subject area

Bioinformatics
Computational Biology
Genomics
Computational Science
Biotechnology
Genetics
Biochemistry
Evolutionary Studies
Parasitology
Virology
Infectious Diseases
Biophysics
Mathematical Biology
Drugs and Devices
Pharmacology
Nutrition
Psychiatry and Psychology
Public Health
Cardiology
Statistics

By Q&A topic

Dimitrios Vlachakis

PeerJ Author & Reviewer

Summary

Please visit www.geneticslab.gr to find out about my group

Bioinformatics Genetics Medical Genetics Molecular Biology

Past or current institution affiliations

Agricultural University of Athens
University of Patras

Work details

Assistant Professor

Agricultural University of Athens
June 2017
Genetics Lab, Biotechnology Department
For more info on my group, please visit: www.geneticslab.gr

Websites

  • Group Website
  • Google Scholar
  • My Journal

PeerJ Contributions

  • Articles 9
  • Preprints 5
  • Reviewed 2
  • Answers 1
November 5, 2020
An updated evolutionary study of the Notch family reveals a new ancient origin and novel invariable motifs as potential pharmacological targets
Dimitrios Vlachakis, Louis Papageorgiou, Ariadne Papadaki, Maria Georga, Sofia Kossida, Elias Eliopoulos
https://doi.org/10.7717/peerj.10334 PubMed 33194454
May 4, 2018
EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation
Afshine Amidi, Shervine Amidi, Dimitrios Vlachakis, Vasileios Megalooikonomou, Nikos Paragios, Evangelia I. Zacharaki
https://doi.org/10.7717/peerj.4750 PubMed 29740518
March 29, 2017
Automatic single- and multi-label enzymatic function prediction by machine learning
Shervine Amidi, Afshine Amidi, Dimitrios Vlachakis, Nikos Paragios, Evangelia I. Zacharaki
https://doi.org/10.7717/peerj.3095 PubMed 28367366
March 1, 2017
Genetic and structural study of DNA-directed RNA polymerase II of Trypanosoma brucei, towards the designing of novel antiparasitic agents
Louis Papageorgiou, Vasileios Megalooikonomou, Dimitrios Vlachakis
https://doi.org/10.7717/peerj.3061 PubMed 28265521
January 13, 2015
DrugOn: a fully integrated pharmacophore modeling and structure optimization toolkit
Dimitrios Vlachakis, Paraskevas Fakourelis, Vasileios Megalooikonomou, Christos Makris, Sophia Kossida
https://doi.org/10.7717/peerj.725 PubMed 25648563
November 6, 2014
Structural models for the design of novel antiviral agents against Greek Goat Encephalitis
Louis Papageorgiou, Styliani Loukatou, Vassiliki Lila Koumandou, Wojciech Makałowski, Vasileios Megalooikonomou, Dimitrios Vlachakis, Sophia Kossida
https://doi.org/10.7717/peerj.664 PubMed 25392762
October 22, 2013
Protein signatures using electrostatic molecular surfaces in harmonic space
C. Sofia Carvalho, Dimitrios Vlachakis, Georgia Tsiliki, Vasileios Megalooikonomou, Sophia Kossida
https://doi.org/10.7717/peerj.185 PubMed 24167780
June 11, 2013
Molecular modeling and pharmacophore elucidation study of the Classical Swine Fever virus helicase as a promising pharmacological target
Dimitrios Vlachakis, Sophia Kossida
https://doi.org/10.7717/peerj.85 PubMed 23781407
May 7, 2013
A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV helicase
Dimitrios Vlachakis, Vassiliki Lila Koumandou, Sophia Kossida
https://doi.org/10.7717/peerj.74 PubMed 23678398
February 5, 2017 - Version: 1
Genetic and structural study of DNA-directed RNA polymerase II of Trypanosoma brucei, towards the designing of novel antiparasitic agents
Louis Papageorgiou, Vasileios Megalooikonomou, Dimitrios Vlachakis
https://doi.org/10.7287/peerj.preprints.2775v1
March 20, 2015 - Version: 1
Integrating bioinformatics tools to investigate protein phosphorylation
Dimitrios Vlachakis, Elena Bencurova, Mangesh Bhide, Sophia Kossida
https://doi.org/10.7287/peerj.preprints.916v1
December 27, 2014 - Version: 1
Understanding of emotions and cardiovascular related diseases
Dimitrios Vlachakis, Chrisanthy Vlachakis
https://doi.org/10.7287/peerj.preprints.761v1
December 5, 2014 - Version: 1
DrugOn: a fully integrated pharmacophore modeling and structure optimization toolkit
Dimitrios Vlachakis, Paraskevas Fakourelis, Christos Makris, Sophia Kossida
https://doi.org/10.7287/peerj.preprints.668v1
October 14, 2014 - Version: 1
Prevalence of disordered eating attitudes in young adults
Dimitrios Vlachakis, Chrisanthy Vlachakis
https://doi.org/10.7287/peerj.preprints.538v1

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

October 12, 2020
Mutations of SARS-CoV-2 nsp14 exhibit strong association with increased genome-wide mutation load
Doğa Eskier, Aslı Suner, Yavuz Oktay, Gökhan Karakülah
https://doi.org/10.7717/peerj.10181 PubMed 33083157
September 15, 2015
Integrated probability of coronary heart disease subject to the −308 tumor necrosis factor-alpha SNP: a Bayesian meta-analysis
C. Sofia Carvalho
https://doi.org/10.7717/peerj.1236 PubMed 26401451

1 Answer

0
Which is the down threshold for conventional homology modelling?