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Alexander Bolshoy
PeerJ Editor & Reviewer
3,985 Points

Contributions by role

Reviewer 15
Editor 3,970

Contributions by subject area

Bioinformatics
Genetics
Microbiology
Biochemistry
Cell Biology
Molecular Biology
Virology
Epidemiology
Infectious Diseases
Pathology
Computational Biology
Data Mining and Machine Learning
Data Science
Ecology
Veterinary Medicine
Zoology
Genomics
Mathematical Biology
Oncology
Medical Genetics
Gastroenterology and Hepatology
Algorithms and Analysis of Algorithms
Respiratory Medicine
Histology
Artificial Intelligence
Computational Linguistics
Natural Language and Speech
Text Mining
Sentiment Analysis
Surgery and Surgical Specialties
Databases
Statistics
Computational Science
Software Engineering
Agricultural Science
Plant Science
Biodiversity
Biogeography
Conservation Biology
Biotechnology
Taxonomy
Evolutionary Studies
Cryptography
Neural Networks
COVID-19
Internet of Things
Distributed and Parallel Computing

Alexander Bolshoy

PeerJ Editor & Reviewer

Summary

Dr. Bolshoy has completed his PhD from the Weizmann Institute of Science in 1993. He is the author of the book "Genome Clustering: from linguistics models to classification of genetic texts", Springer-Verlag, 2010, and many scientific articles. He is serving as an editorial member of several reputed journals like Bioinformatics and Biology Insights, Computational Biology and Chemistry, ISRN Bioinformatics; and Linguistic Frontiers.

Bioinformatics Computational Biology Computational Linguistics Data Science Evolutionary Studies Genomics Microbiology

Editorial Board Member

PeerJ - the Journal of Life & Environmental Sciences
PeerJ Computer Science

Past or current institution affiliations

Palacký University Olomouc
University of Haifa

Work details

Associated Professor

Palacký University Olomouc
July 2019
General Linguistics
DNA Linguistics, Sequence Codes

Associated Professor

University of Haifa
October 1998
Department of Evolutionary and Environmental Biology
Molecular Evolution, Evolutionary Microbiology, DNA Information

Websites

  • Google Scholar

PeerJ Contributions

  • Edited 31

Academic Editor on

March 26, 2025
iPro-CSAF: identification of promoters based on convolutional spiking neural networks and spiking attention mechanism
Qian Zhou, Jie Meng, Hao Luo
https://doi.org/10.7717/peerj-cs.2761
February 7, 2025
RCE-IFE: recursive cluster elimination with intra-cluster feature elimination
Cihan Kuzudisli, Burcu Bakir-Gungor, Bahjat Qaqish, Malik Yousef
https://doi.org/10.7717/peerj-cs.2528
January 30, 2025
Prediction of influenza A virus-human protein-protein interactions using XGBoost with continuous and discontinuous amino acids information
Binghua Li, Xin Li, Xiaoyu Li, Li Wang, Jun Lu, Jia Wang
https://doi.org/10.7717/peerj.18863 PubMed 39897484
January 23, 2025
The bacterial composition signatures of perianal abscess and origin of infecting microbes
Song Han, Wenya Su, Kefeng Fan, Zhen Xu, Hai Xu, Mingyu Wang, Ling Li, Wenlong Shen
https://doi.org/10.7717/peerj.18855 PubMed 39866571
January 20, 2025
Genetic determinants of COVID-19 severity and mortality: ACE1 Alu 287 bp polymorphism and ACE1, ACE2, TMPRSS2 expression in hospitalized patients
João Locke Ferreira de Araújo, Átila Duque Rossi, Jessica Maciel de Almeida, Hugo José Alves, Isabela de Carvalho Leitão, Renata Eliane de Ávila, Anna Carla Pinto Castiñeiras, Jéssica da Silva Oliveira, Rafael Mello Galliez, Marlon Daniel Lima Tonini, Débora Souza Faffe, Shana Priscila Coutinho Barroso Barroso, Gustavo Gomes Resende, Cássia Cristina Alves Gonçalves, Terezinha Marta Pereira Pinto Castiñeiras, Amilcar Tanuri, Mauro Martins Teixeira, Renato Santana Aguiar, Cynthia Chester Cardoso, Renan Pedra de Souza
https://doi.org/10.7717/peerj.18508 PubMed 39850833
January 14, 2025
Benchmarking of a time-saving and scalable protocol for the extraction of DNA from diverse viromes
Michael Shamash, Saniya Kapoor, Corinne F. Maurice
https://doi.org/10.7717/peerj.18785 PubMed 39830964
December 20, 2024
Quorum sensing signals of the grapevine crown gall bacterium, Novosphingobium sp. Rr2-17: use of inducible expression and polymeric resin to sequester acyl-homoserine lactones
Han Ming Gan, Lucas Dailey, Peter Wengert, Nigel Halliday, Paul Williams, André O. Hudson, Michael A. Savka
https://doi.org/10.7717/peerj.18657 PubMed 39735558
December 12, 2024
Exploration of key mechanisms underlying the therapeutic effects of AMD3100 on attenuating lipopolysaccharide-induced acute lung injury in mice
Zhou Lv, Bohan Zhang, Hui Zhang, Yanfei Mao, Qihong Yu, Wenwen Dong
https://doi.org/10.7717/peerj.18698 PubMed 39677961
November 29, 2024
An innovative artificial neural network model for smart crop prediction using sensory network based soil data
Shabana Ramzan, Basharat Ali, Ali Raza, Ibrar Hussain, Norma Latif Fitriyani, Yeonghyeon Gu, Muhammad Syafrudin
https://doi.org/10.7717/peerj-cs.2478
September 11, 2023
Graph-based methods for Author Name Disambiguation: a survey
Michele De Bonis, Fabrizio Falchi, Paolo Manghi
https://doi.org/10.7717/peerj-cs.1536
September 8, 2023
Absence of enterotypes in the human gut microbiomes reanalyzed with non-linear dimensionality reduction methods
Ivan Bulygin, Vladislav Shatov, Anton Rykachevskiy, Arsenii Raiko, Alexander Bernstein, Evgeny Burnaev, Mikhail S. Gelfand
https://doi.org/10.7717/peerj.15838 PubMed 37701837
September 4, 2023
J-score: a robust measure of clustering accuracy
Navid Ahmadinejad, Yunro Chung, Li Liu
https://doi.org/10.7717/peerj-cs.1545
July 13, 2023
Genome assembly composition of the String “ACGT” array: a review of data structure accuracy and performance challenges
Sherif Magdy Mohamed Abdelaziz Barakat, Roselina Sallehuddin, Siti Sophiayati Yuhaniz, Raja Farhana R. Khairuddin, Yasir Mahmood
https://doi.org/10.7717/peerj-cs.1180
April 5, 2023
Automatic detection of semantic primitives using optimization based on genetic algorithm
Yevhen Kostiuk, Obdulia Pichardo-Lagunas, Anton Malandii, Grigori Sidorov
https://doi.org/10.7717/peerj-cs.1282
August 29, 2022
Evolution of Helicobacter spp: variability of virulence factors and their relationship to pathogenicity
Carlos F. Prada, Maria A. Casadiego, Caio CM Freire
https://doi.org/10.7717/peerj.13120 PubMed 36061745
August 11, 2022
Novel Driver Strength Index highlights important cancer genes in TCGA PanCanAtlas patients
Aleksey V. Belikov, Alexey D. Vyatkin, Sergey V. Leonov
https://doi.org/10.7717/peerj.13860 PubMed 35975235
June 16, 2022
An efficient numerical representation of genome sequence: natural vector with covariance component
Nan Sun, Xin Zhao, Stephen S.-T. Yau
https://doi.org/10.7717/peerj.13544 PubMed 35729905
July 9, 2021
Empirical evaluation of methods for de novo genome assembly
Firaol Dida, Gangman Yi
https://doi.org/10.7717/peerj-cs.636
May 5, 2021
ToRQuEMaDA: tool for retrieving queried Eubacteria, metadata and dereplicating assemblies
Raphaël R. Léonard, Marie Leleu, Mick Van Vlierberghe, Luc Cornet, Frédéric Kerff, Denis Baurain
https://doi.org/10.7717/peerj.11348 PubMed 33996287
April 21, 2021
Soft Bigram distance for names matching
Mohammed Hadwan, Mohammed A. Al-Hagery, Maher Al-Sanabani, Salah Al-Hagree
https://doi.org/10.7717/peerj-cs.465
April 15, 2021
Bioinformatics analysis for the identification of differentially expressed genes and related signaling pathways in H. pylori-CagA transfected gastric cancer cells
Dingyu Chen, Chao Li, Yan Zhao, Jianjiang Zhou, Qinrong Wang, Yuan Xie
https://doi.org/10.7717/peerj.11203 PubMed 33954041
April 6, 2021
Feature-based detection of automated language models: tackling GPT-2, GPT-3 and Grover
Leon Fröhling, Arkaitz Zubiaga
https://doi.org/10.7717/peerj-cs.443
April 5, 2021
Syntactic- and morphology-based text augmentation framework for Arabic sentiment analysis
Rehab Duwairi, Ftoon Abushaqra
https://doi.org/10.7717/peerj-cs.469
March 16, 2021
Genomic characterization and phylogenetic analysis of the first SARS-CoV-2 variants introduced in Lebanon
Rita Feghali, Georgi Merhi, Aurelia Kwasiborski, Veronique Hourdel, Nada Ghosn, Sima Tokajian
https://doi.org/10.7717/peerj.11015 PubMed 34611501
February 23, 2021
Characterization of the GRAS gene family reveals their contribution to the high adaptability of wheat
Yanfeng Liu, Wei Wang
https://doi.org/10.7717/peerj.10811 PubMed 33665016
January 19, 2021
Impact of Mycoplasma ovipneumoniae on juvenile bighorn sheep (Ovis canadensis) survival in the northern Basin and Range ecosystem
Robert S. Spaan, Clinton W. Epps, Rachel Crowhurst, Donald Whittaker, Mike Cox, Adam Duarte
https://doi.org/10.7717/peerj.10710 PubMed 33552728
January 6, 2021
A novel similarity score based on gene ranks to reveal genetic relationships among diseases
Dongmei Luo, Chengdong Zhang, Liwan Fu, Yuening Zhang, Yue-Qing Hu
https://doi.org/10.7717/peerj.10576 PubMed 33505797
November 30, 2020
A machine learning framework for the prediction of chromatin folding in Drosophila using epigenetic features
Michal B. Rozenwald, Aleksandra A. Galitsyna, Grigory V. Sapunov, Ekaterina E. Khrameeva, Mikhail S. Gelfand
https://doi.org/10.7717/peerj-cs.307
October 12, 2020
Mutations of SARS-CoV-2 nsp14 exhibit strong association with increased genome-wide mutation load
Doğa Eskier, Aslı Suner, Yavuz Oktay, Gökhan Karakülah
https://doi.org/10.7717/peerj.10181 PubMed 33083157
October 7, 2020
COVID-19: molecular and serological detection methods
Ahmed E. Dhamad, Muna A. Abdal Rhida
https://doi.org/10.7717/peerj.10180 PubMed 33083156
September 1, 2020
Genomic diversity and evolution, diagnosis, prevention, and therapeutics of the pandemic COVID-19 disease
M. Nazmul Hoque, Abed Chaudhury, Md Abdul Mannan Akanda, M. Anwar Hossain, Md Tofazzal Islam
https://doi.org/10.7717/peerj.9689 PubMed 33005486