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November 2023

Table of Contents - PeerJ (Biology Articles)

November 9, 2023

A novel metabolism-related gene signature in patients with hepatocellular carcinoma

Bin Ru, Jiaqi Hu, Nannan Zhang, Quan Wan

https://doi.org/10.7717/peerj.16335 PubMed 38025761

November 20, 2023

Genome-wide identification of 2-oxoglutarate and Fe (II)-dependent dioxygenase family genes and their expression profiling under drought and salt stress in potato

Hanny Chauhan, Aiana, Kashmir Singh

https://doi.org/10.7717/peerj.16449 PubMed 38025721

November 27, 2023

kakapo: easy extraction and annotation of genes from raw RNA-seq reads

Karolis Ramanauskas, Boris Igić

https://doi.org/10.7717/peerj.16456 PubMed 38034874

November 15, 2023

Seq2science: an end-to-end workflow for functional genomics analysis

Maarten van der Sande, Siebren Frölich, Tilman Schäfers, Jos G.A. Smits, Rebecca R. Snabel, Sybren Rinzema, Simon J. van Heeringen

https://doi.org/10.7717/peerj.16380 PubMed 38025697

November 8, 2023

Dex-Benchmark: datasets and code to evaluate algorithms for transcriptomics data analysis

Zhuorui Xie, Clara Chen, Avi Ma’ayan

https://doi.org/10.7717/peerj.16351 PubMed 37953774

November 29, 2023

Buried treasure in a public repository: Mining mitochondrial genes of 32 annelid species from sequence reads deposited in the Sequence Read Archive (SRA)

Genki Kobayashi

https://doi.org/10.7717/peerj.16446 PubMed 38047014

November 7, 2023

RBM25 binds to and regulates alternative splicing levels of Slc38a9, Csf1, and Coro6 to affect immune and inflammatory processes in H9c2 cells

Xin Tian, Guangli Zhou, Hao Li, Xueting Zhang, Lingmin Zhao, Keyi Zhang, Luqiao Wang, Mingwei Liu, Chen Liu, Ping Yang

https://doi.org/10.7717/peerj.16312 PubMed 37953772

November 17, 2023

Comparative chloroplast genome analyses provide insights into evolutionary history of Rhizophoraceae mangroves

Ying Zhang, Yuchen Yang, Meng He, Ziqi Wei, Xi Qin, Yuanhao Wu, Qingxing Jiang, Yufeng Xiao, Yong Yang, Wei Wang, Xiang Jin

https://doi.org/10.7717/peerj.16400 PubMed 38025714

November 22, 2023

Metagenomic binning of PacBio HiFi data prior to assembly reveals a complete genome of Cosmopolites sordidus (Germar) (Coleopterea: Curculionidae, Dryophthorinae) the most damaging arthropod pest of bananas and plantains

Alfredo Rodriguez Ruiz, Alex R. Van Dam

https://doi.org/10.7717/peerj.16276 PubMed 38025758

November 21, 2023

Gamma-rays induced mutations increase soybean oil and protein contents

Geehan Mohsen, Said S. Soliman, Elsayed I. Mahgoub, Tarik A. Ismail, Elsayed Mansour, Khairiah M. Alwutayd, Fatmah A. Safhi, Diaa Abd El-Moneim, Rahma Alshamrani, Osama O. Atallah, Wael F. Shehata, Abdallah A. Hassanin

https://doi.org/10.7717/peerj.16395 PubMed 38025746

November 30, 2023

Circular RNA hsa_circ_0051246 acts as a microRNA-375 sponge to promote the progression of gastric cancer stem cells via YAP1

Minghui Deng, Yefeng Xu, Yongwei Yao, Yiqing Wang, Qingying Yan, Miao Cheng, YunXia Liu

https://doi.org/10.7717/peerj.16523 PubMed 38505381

November 20, 2023

Cloning and functional characterization of porcine AACS revealing the regulative roles for fat deposition in pigs

Pan Zhang, Bo Zhang, Yu Fu, Pan Li, Hao Zhang

https://doi.org/10.7717/peerj.16406 PubMed 38025737

November 29, 2023

Rhizocompartmental microbiomes of arrow bamboo (Fargesia nitida) and their relation to soil properties in Subalpine Coniferous Forests

Nan Nan Zhang, Xiao Xia Chen, Jin Liang, Chunzhang Zhao, Jun Xiang, Lin Luo, En Tao Wang, Fusun Shi

https://doi.org/10.7717/peerj.16488 PubMed 38047031

November 21, 2023

Genomic assembly, characterization, and quantification of DICER-like gene family in Okra plants under dehydration conditions

Hagar Tarek Elhefnawi, Mohamed Abdel Salam Rashed, Ayman Atta, Rana M. Alshegaihi, Khairiah Mubarak Alwutayd, Diaa Abd El-Moneim, Mahmoud Magdy

https://doi.org/10.7717/peerj.16232 PubMed 38025717

November 1, 2023

Genome-wide identification of CaARR-Bs transcription factor gene family in pepper and their expression patterns under salinity stress

Rana M. Alshegaihi, Salha Mesfer Alshamrani

https://doi.org/10.7717/peerj.16332 PubMed 37927789

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