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January 2023

Table of Contents - PeerJ (Biology Articles)

January 26, 2023

Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples

Tunc Kayikcioglu, Jasmine Amirzadegan, Hugh Rand, Bereket Tesfaldet, Ruth E. Timme, James B. Pettengill

https://doi.org/10.7717/peerj.14596 PubMed 36721781

January 25, 2023

Genome-wide in silico identification of glutathione S-transferase (GST) gene family members in fig (Ficus carica L.) and expression characteristics during fruit color development

Longbo Liu, Shuxuan Zheng, Dekun Yang, Jie Zheng

https://doi.org/10.7717/peerj.14406 PubMed 36718451

January 17, 2023

Genome-wide identification and expression profile analysis of SWEET genes in Chinese jujube

Chong Yang, Xuan Zhao, Zhi Luo, Lihu Wang, Mengjun Liu

https://doi.org/10.7717/peerj.14704 PubMed 36684667

January 3, 2023

Integrative genomic and transcriptomic analyses of a bud sport mutant ‘Jinzao Wuhe’ with the phenotype of large berries in grapevines

Jianquan Huang, Guan Zhang, Yanhao Li, Mingjie Lyu, He Zhang, Na Zhang, Rui Chen

https://doi.org/10.7717/peerj.14617 PubMed 36620751

January 13, 2023

Corrosion-influencing microorganisms in petroliferous regions on a global scale: systematic review, analysis, and scientific synthesis of 16S amplicon metagenomic studies

Joyce Dutra, Rosimeire Gomes, Glen Jasper Yupanqui García, Danitza Xiomara Romero-Cale, Mariana Santos Cardoso, Vinicius Waldow, Claudia Groposo, Rubens N. Akamine, Maira Sousa, Henrique Figueiredo, Vasco Azevedo, Aristóteles Góes-Neto

https://doi.org/10.7717/peerj.14642 PubMed 36655046

January 11, 2023

Taxonomic review of Saguinus mystax (Spix, 1823) (Primates, Callitrichidae), and description of a new species

Gerson Paulino Lopes, Fábio Rohe, Fabrício Bertuol, Erico Polo, Ivan Junqueira Lima, João Valsecchi, Tamily Carvalho Melo Santos, Stephen D. Nash, Maria Nazareth Ferreira da Silva, Jean P. Boubli, Izeni Pires Farias, Tomas Hrbek

https://doi.org/10.7717/peerj.14526 PubMed 36647446

January 10, 2023

Computed tomography-based radiomics machine learning models for prediction of histological invasiveness with sub-centimeter subsolid pulmonary nodules: a retrospective study

Haochuan Zhang, Shixiong Wang, Zhenkai Deng, Yangli Li, Yingying Yang, He Huang

https://doi.org/10.7717/peerj.14559 PubMed 36643621

January 6, 2023

On the origin of mitochondria: a multilayer network approach

Dérick Gabriel F. Borges, Daniel S. Carvalho, Gilberto C. Bomfim, Pablo Ivan P. Ramos, Jerzy Brzozowski, Aristóteles Góes-Neto, Roberto F. S. Andrade, Charbel El-Hani

https://doi.org/10.7717/peerj.14571 PubMed 36632145

January 13, 2023

Immunoexpression of stem cell markers SOX-2, NANOG AND OCT4 in ameloblastoma

Karolyny Martins Balbinot, Felippe José Almeida Loureiro, Giordanna Pereira Chemelo, Ricardo Alves Mesquita, Aline Maria Pereira Cruz Ramos, Rommel Thiago Jucá Ramos, Artur Luiz da Costa da Silva, Sílvio Augusto Fernandes de Menezes, Maria Sueli da Silva Kataoka, Sergio de Melo Alves Junior, João de Jesus Viana Pinheiro

https://doi.org/10.7717/peerj.14349 PubMed 36655039

January 10, 2023

Comprehensive analysis of fatty acid metabolism-related gene signatures for predicting prognosis in patients with prostate cancer

Hongbo Wang, Zhendong Liu, Yubo Wang, Dali Han, Yuelin Du, Bin Zhang, Yang He, Junyao Liu, Wei Xiong, Xingxing Zhang, Yanzheng Gao, Panfeng Shang

https://doi.org/10.7717/peerj.14646 PubMed 36643625

January 20, 2023

Mendelian randomization investigation identified the causal relationship between body fat indexes and the risk of bladder cancer

Bangbei Wan, Ning Ma, Weiying Lu

https://doi.org/10.7717/peerj.14739 PubMed 36700002

January 26, 2023

Next-generation sequencing shows the genomic features of ovarian clear cell cancer and compares the genetic architectures of high-grade serous ovarian cancer and clear cell carcinoma in ovarian and endometrial tissues

Meifu Gan, Zaixian Tai, Yijian Yu, Chao Zhang, Juan Xu

https://doi.org/10.7717/peerj.14653 PubMed 36721777

January 25, 2023

Construction of a ceRNA network of regulated ferroptosis in doxorubicin-induced myocardial injury

Hongwei Ye, Yuping Li, Lu Li, Yuhui Huang, Jiahui Wang, Qin Gao

https://doi.org/10.7717/peerj.14767 PubMed 36718444

January 10, 2023

Isopsoralen suppresses receptor activator of nuclear factor kappa-β ligand-induced osteoclastogenesis by inhibiting the NF-κB signaling

Wanda Zhan, Binjia Ruan, Hui Dong, Chaoyong Wang, Shuangshi Wu, Hang Yu, Xiaohang Xu, Hao Sun, Jun Cai

https://doi.org/10.7717/peerj.14560 PubMed 36643647

January 16, 2023

Molecular marker development and genetic diversity exploration in Medicago polymorpha

Hailong Ren, Zhenwu Wei, Bo Zhou, Xiang Chen, Qiang Gao, Zhibin Zhang

https://doi.org/10.7717/peerj.14698 PubMed 36684677

January 17, 2023

Comparative transcriptome analysis of Armillaria gallica 012m in response to ethephon treatment

Haiying Yang, Kaixiang He, Yapu Cao, Zhihao Li, Qiaolin Ji, Jingxian Sun, Ganpeng Li, Xin Chen, Haiying Mo, Gang Du, Qingqing Li

https://doi.org/10.7717/peerj.14714 PubMed 37056223

January 10, 2023

CMTM6 is highly expressed in lung adenocarcinoma and can be used as a biomarker of a poor diagnosis

Daqi Jia, Li Xiong, Honggang Xue, Jidong Li

https://doi.org/10.7717/peerj.14668 PubMed 36643629

January 23, 2023

Genome-wide identification and expression reveal the involvement of the FCS-like zinc finger (FLZ) gene family in Gossypium hirsutum at low temperature

JunDuo Wang, Zhiqiang Li, Yajun Liang, Juyun Zheng, Zhaolong Gong, Guohui Zhou, Yuhui Xu, Xueyuan Li

https://doi.org/10.7717/peerj.14690 PubMed 36710860

January 23, 2023

A clustering method for small scRNA-seq data based on subspace and weighted distance

Zilan Ning, Zhijun Dai, Hongyan Zhang, Yuan Chen, Zheming Yuan

https://doi.org/10.7717/peerj.14706 PubMed 36710872

January 16, 2023

Transcription analyses of differentially expressed mRNAs, lncRNAs, circRNAs, and miRNAs in the growth plate of rats with glucocorticoid-induced growth retardation

Mingyue Yin, Junqi Wang, Juanjuan Zhang, Wei Wang, Wenli Lu, Fei Xu, Xiaoyu Ma, Sheng Lyu, Lifen Chen, Lidan Zhang, Zhiya Dong, Yuan Xiao

https://doi.org/10.7717/peerj.14603 PubMed 36684670

January 12, 2023

Comprehensive genomic signature of pyroptosis-related genes and relevant characterization in hepatocellular carcinoma

Sheng Wang, Songsen Gao, Liang Shan, Xueyi Qian, Jiajie Luan, Xiongwen Lv

https://doi.org/10.7717/peerj.14691 PubMed 36650832

January 13, 2023

Genome-wide identification and expression analysis of calmodulin-like proteins in cucumber

Yunfen Liu, Feilong Yin, Lingyan Liao, Liang Shuai

https://doi.org/10.7717/peerj.14637 PubMed 36655051

January 17, 2023

Detect feature edges for diagnosis of bacterial vaginosis

Jie Li, Yaotang Li

https://doi.org/10.7717/peerj.14667 PubMed 36684669

January 6, 2023

A novel fatty acid metabolism-related gene prognostic signature and candidate drugs for patients with hepatocellular carcinoma

Jingze Yang, Xin Yang, Jinlu Guo, Shi Liu

https://doi.org/10.7717/peerj.14622 PubMed 36632140

January 12, 2023

Genome-wide identification of MAXs genes for strigolactones synthesis/signaling in solanaceous plants and analysis of their potential functions in tobacco

Lixianqiu Wang, Bingjie Li, Changbo Dai, Anming Ding, Weifeng Wang, Haoqi Shi, Mengmeng Cui, Yuhe Sun, Jing Lv

https://doi.org/10.7717/peerj.14669 PubMed 36650839

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