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November 2022

Table of Contents - PeerJ (Biology Articles)

November 8, 2022

ScanFold 2.0: a rapid approach for identifying potential structured RNA targets in genomes and transcriptomes

Ryan J. Andrews, Warren B. Rouse, Collin A. O’Leary, Nicholas J. Booher, Walter N. Moss

https://doi.org/10.7717/peerj.14361 PubMed 36389431

November 7, 2022

Identification and expression analysis of maize NF-YA subunit genes

Mingyue Lv, Hongzhe Cao, Xue Wang, Kang Zhang, Helong Si, Jinping Zang, Jihong Xing, Jingao Dong

https://doi.org/10.7717/peerj.14306 PubMed 36389434

November 30, 2022

Screening of high-risk deleterious missense variations in the CYP1B1 gene implicated in the pathogenesis of primary congenital glaucoma: A comprehensive in silico approach

Muhammad Shahid, Ahmad Azfaralariff, Muhammad Tufail, Nazeer Hussain Khan, Ahmed Abdulkareem Najm, Sabika Firasat, Muhammad Zubair, Shazrul Fazry, Douglas Law

https://doi.org/10.7717/peerj.14132 PubMed 36518267

November 11, 2022

Human access and deterministic processes play a major role in structuring planktonic and sedimentary bacterial and eukaryotic communities in lakes

John K. Pearman, Georgia Thomson-Laing, Lucy Thompson, Sean Waters, Marcus J. Vandergoes, Jamie D. Howarth, Ian C. Duggan, Ian D. Hogg, Susanna A. Wood

https://doi.org/10.7717/peerj.14378 PubMed 36389411

November 29, 2022

Pea eggplant (Solanum torvum Swartz) is a source of plant food polyphenols with SARS-CoV inhibiting potential

Nisha Govender, Norazura Syazlin Zulkifli, Nurul Farhana Badrul Hisham, Nur Syatila Ab Ghani, Zeti-Azura Mohamed-Hussein

https://doi.org/10.7717/peerj.14168 PubMed 36518265

November 28, 2022

A pan-cancer analysis of the oncogenic role of ribonucleotide reductase subunit M2 in human tumors

Yaqun Li, Wenhuan Fu, Zikai Geng, Yun Song, Xionggang Yang, Tianye He, Jian Wu, Bin Wang

https://doi.org/10.7717/peerj.14432 PubMed 36518297

November 10, 2022

bestDEG: a web-based application automatically combines various tools to precisely predict differentially expressed genes (DEGs) from RNA-Seq data

Unitsa Sangket, Prasert Yodsawat, Jiratchaya Nuanpirom, Ponsit Sathapondecha

https://doi.org/10.7717/peerj.14344 PubMed 36389403

November 10, 2022

Investigation of the potential mechanism of the Shugan Xiaozhi decoction for the treatment of nonalcoholic fatty liver disease based on network pharmacology, molecular docking and molecular dynamics simulation

Rong Yang, Huili Yang, Dansheng Jiang, Linyi Xu, Lian Feng, Yufeng Xing

https://doi.org/10.7717/peerj.14171 PubMed 36389420

November 17, 2022

Regulatory mechanism of Scutellaria baicalensis Georgi on bone cancer pain based on network pharmacology and experimental verification

Aitao Wang, Dongmei Guo, Hongyu Cheng, Hui Jiang, Xiaojuan Liu, Muer Tie

https://doi.org/10.7717/peerj.14394 PubMed 36415861

November 30, 2022

Genetic evolution of hemagglutinin and neuraminidase genes of H5N1 highly pathogenic avian influenza viruses in Thailand

Pirom Noisumdaeng, Juthamas Phadungsombat, Sasrinakarn Weerated, Witthawat Wiriyarat, Pilaipan Puthavathana

https://doi.org/10.7717/peerj.14419 PubMed 36518286

November 11, 2022

Comparative transcriptomics and bioinformatics analysis of genes related to photosynthesis in Eucalyptus camaldulensis

Ni Zhan, Liejian Huang, Zhen Wang, Yaojian Xie, Xiuhua Shang, Guo Liu, Zhihua Wu

https://doi.org/10.7717/peerj.14351 PubMed 36389400

November 8, 2022

MTSv: rapid alignment-based taxonomic classification and high-confidence metagenomic analysis

Tara N. Furstenau, Tsosie Schneider, Isaac Shaffer, Adam J. Vazquez, Jason Sahl, Viacheslav Fofanov

https://doi.org/10.7717/peerj.14292 PubMed 36389404

November 1, 2022

Global transcriptome dissection of pollen–pistil interactions induced self-incompatibility in dragon fruit (Selenicereus spp.)

Jun-cheng Li, Yulin Wang, Hong-fen Dai, Qingming Sun

https://doi.org/10.7717/peerj.14165 PubMed 36340195

November 8, 2022

Comparative transcriptome sequencing analysis of female and male Decapterus macrosoma

Zizi Cai, Shigang Liu, Wei Wang, Rui Wang, Xing Miao, Puqing Song, Binbin Shan, Liangming Wang, Yuan Li, Longshan Lin

https://doi.org/10.7717/peerj.14342 PubMed 36389430

November 17, 2022

Evolution of sequence traits of prion-like proteins linked to amyotrophic lateral sclerosis (ALS)

Jiayi Luo, Paul M. Harrison

https://doi.org/10.7717/peerj.14417 PubMed 36415860

November 2, 2022

Transcriptome and metabolome analyses of lignin biosynthesis mechanism of Platycladus orientalis

Ying Li, Qikui Wu, Xiaoyan Men, Fusheng Wu, Qian Zhang, Weinan Li, Limin Sun, Shiyan Xing

https://doi.org/10.7717/peerj.14172 PubMed 36345485

November 18, 2022

Dissection of leucine-rich repeat receptor-like protein kinases: insight into resistance to Fusarium wilt in tung tree

Yunpeng Cao, Tingting Fan, Bo Zhang, Yanli Li

https://doi.org/10.7717/peerj.14416 PubMed 36590451

November 25, 2022

Investigating isoform switching in RHBDF2 and its role in neoplastic growth in breast cancer

Mehar Masood, Madahiah Bint E Masood, Noor Us Subah, Maria Shabbir, Rehan Zafar Paracha, Mehak Rafiq

https://doi.org/10.7717/peerj.14124 PubMed 36452073

November 7, 2022

The seeker R package: simplified fetching and processing of transcriptome data

Joshua L. Schoenbachler, Jacob J. Hughey

https://doi.org/10.7717/peerj.14372 PubMed 36389425

November 9, 2022

Using search trends to analyze web-based users’ behavior profiles connected with COVID-19 in mainland China: infodemiology study based on hot words and Baidu Index

Shuai Jiang, Changqiao You, Sheng Zhang, Fenglin Chen, Guo Peng, Jiajie Liu, Daolong Xie, Yongliang Li, Xinhong Guo

https://doi.org/10.7717/peerj.14343 PubMed 36389414

November 23, 2022

Comprehensive proteomic and metabolomic analysis uncover the response of okra to drought stress

Jiyue Wang, Denghong Shi, Yu Bai, Ting Zhang, Yan Wu, Zhenghong Liu, Lian Jiang, Lin Ye, Zele Peng, Hui Yuan, Yan Liu

https://doi.org/10.7717/peerj.14312 PubMed 36444379

November 30, 2022

PredictION: a predictive model to establish the performance of Oxford sequencing reads of SARS-CoV-2

David E. Valencia-Valencia, Diana Lopez-Alvarez, Nelson Rivera-Franco, Andres Castillo, Johan S. Piña, Carlos A. Pardo, Beatriz Parra

https://doi.org/10.7717/peerj.14425 PubMed 36518292

November 4, 2022

APPINetwork: an R package for building and computational analysis of protein–protein interaction networks

Simon Gosset, Annie Glatigny, Mélina Gallopin, Zhou Yi, Marion Salé, Marie-Hélène Mucchielli-Giorgi

https://doi.org/10.7717/peerj.14204 PubMed 36353604

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