Biology & Life sciences - Table of Contents

January 13, 2022

Tamás Görföl, Joe Chun-Chia Huang, Gábor Csorba, Dorottya Győrössy, Péter Estók, Tigga Kingston, Kriszta Lilla Szabadi, Ellen McArthur, Juliana Senawi, Neil M. Furey, Vuong Tan Tu, Vu Dinh Thong, Faisal Ali Anwarali Khan, Emy Ritta Jinggong, Melissa Donnelly, Jayaraj Vijaya Kumaran, Jian-Nan Liu, Shiang-Fan Chen, Mao-Ning Tuanmu, Ying-Yi Ho, Heng-Chia Chang, Nurul-Ain Elias, Nur-Izzati Abdullah, Lee-Sim Lim, C Daniel Squire, Sándor Zsebők

https://doi.org/10.7717/peerj.12445 PubMed 35070499

January 5, 2022

Salivary miRNAs as non-invasive biomarkers of hepatocellular carcinoma: a pilot study

Arshiya Mariam, Galen Miller-Atkins, Amika Moro, Alejandro I. Rodarte, Shirin Siddiqi, Lou-Anne Acevedo-Moreno, J. Mark Brown, Daniela S. Allende, Federico Aucejo, Daniel M. Rotroff

https://doi.org/10.7717/peerj.12715 PubMed 35036096

January 5, 2022

Genome-wide identification and expression analyses of C2H2 zinc finger transcription factors in Pleurotus ostreatus

Qiangqiang Ding, Hongyuan Zhao, Peilei Zhu, Xiangting Jiang, Fan Nie, Guoqing Li

https://doi.org/10.7717/peerj.12654 PubMed 35036086

January 5, 2022

Genome-wide sequence identification and expression analysis of N⁶-methyladenosine demethylase in sugar beet (Beta vulgaris L.) under salt stress

Jie Cui, Junli Liu, Junliang Li, Dayou Cheng, Cuihong Dai

https://doi.org/10.7717/peerj.12719 PubMed 35036097

January 11, 2022

Genome-wide identification and expression analysis of the cucumber PYL gene family

Zeyu Zhang, Shilei Luo, Zeci Liu, Zilong Wan, Xueqin Gao, Yali Qiao, Jihua Yu, Guobin Zhang

https://doi.org/10.7717/peerj.12786 PubMed 35047239

January 25, 2022

Identification and validation of a novel signature for prediction the prognosis and immunotherapy benefit in bladder cancer

Yichi Zhang, Yifeng Lin, Daojun Lv, Xiangkun Wu, Wenjie Li, Xueqing Wang, Dongmei Jiang

https://doi.org/10.7717/peerj.12843 PubMed 35127296

January 21, 2022

Genome-wide identification and expression analysis of the VQ gene family in Cucurbita pepo L.

Ke Xu, Ping Wang

https://doi.org/10.7717/peerj.12827 PubMed 35116202

January 4, 2022

Genome-wide identification and expression profile of YABBY genes in Averrhoa carambola

Chengru Li, Na Dong, Liming Shen, Meng Lu, Junwen Zhai, Yamei Zhao, Lei Chen, Zhiting Wan, Zhongjian Liu, Hui Ren, Shasha Wu

https://doi.org/10.7717/peerj.12558 PubMed 35036123

January 4, 2022

Key genes associated with prognosis and metastasis of clear cell renal cell carcinoma

Tingting Zhong, Zeying Jiang, Xiangdong Wang, Honglei Wang, Meiyi Song, Wenfang Chen, Shicong Yang

https://doi.org/10.7717/peerj.12493 PubMed 35036081

January 4, 2022

Seasonal variations and co-occurrence networks of bacterial communities in the water and sediment of artificial habitat in Laoshan Bay, China

Guangjie Fang, Haolin Yu, Huaxiang Sheng, Chuanxi Chen, Yanli Tang, Zhenlin Liang

https://doi.org/10.7717/peerj.12705 PubMed 35036171

January 19, 2022

DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets

Adrià Antich, Creu Palacín, Xavier Turon, Owen S. Wangensteen

https://doi.org/10.7717/peerj.12758 PubMed 35111399

January 13, 2022

Genome-wide identification and evolution of WNK kinases in Bambusoideae and transcriptional profiling during abiotic stress in Phyllostachys edulis

RongXiu Liu, Naresh Vasupalli, Dan Hou, Antony Stalin, Hantian Wei, Huicong Zhang, Xinchun Lin

https://doi.org/10.7717/peerj.12718 PubMed 35070502

January 18, 2022

Bioinformatics analysis and identification of hub genes and immune-related molecular mechanisms in chronic myeloid leukemia

Fangyi Yao, Cui Zhao, Fangmin Zhong, Tingyu Qin, Shuqi Li, Jing Liu, Bo Huang, Xiaozhong Wang

https://doi.org/10.7717/peerj.12616 PubMed 35111390

January 13, 2022

Therapeutic targeting of ARID1A and PI3K/AKT pathway alterations in cholangiocarcinoma

Supharada Tessiri, Anchalee Techasen, Sarinya Kongpetch, Achira Namjan, Watcharin Loilome, Waraporn Chan-on, Raynoo Thanan, Apinya Jusakul

https://doi.org/10.7717/peerj.12750 PubMed 35070505

January 17, 2022

Screening and identification of differentially expressed long non-coding RNAs in multidrug-resistant tuberculosis

Junwei Zhao, ShuHui Gao, Chunguang Chen, Hui Li, Shaohua Wang, Yongmin Yu, Liang Ming

https://doi.org/10.7717/peerj.12776 PubMed 35111403

January 18, 2022

Exploring the potential biomarkers for prognosis of glioblastoma via weighted gene co-expression network analysis

Mengyuan Zhang, Zhike Zhou, Zhouyang Liu, Fangxi Liu, Chuansheng Zhao

https://doi.org/10.7717/peerj.12768 PubMed 35111402

January 10, 2022

Identification and expression analysis of the sucrose synthase gene family in pomegranate (Punica granatum L.)

Longbo Liu, Jie Zheng

https://doi.org/10.7717/peerj.12814 PubMed 35047243

January 31, 2022

Identification of key genes and biological pathways in Chinese lung cancer population using bioinformatics analysis

Ping Liu, Hui Li, Chunfeng Liao, Yuling Tang, Mengzhen Li, Zhouyu Wang, Qi Wu, Yun Zhou

https://doi.org/10.7717/peerj.12731 PubMed 35178291

January 20, 2022

Knockdown of GmD53a confers strigolactones mediated rhizobia interaction and promotes nodulation in soybean

Naveed Rehman, Fahim Ullah Khan, Muhammad Imran, Shahid Ali Rajput, Yiming Li, Ihteram Ullah, Rana waseem Akhtar, Muhammad Imran, Arwa Abdulkreem AL-Huqail, Ahmad El Askary, Amany Salah Khalifa, Muhammad Tehseen Azhar

https://doi.org/10.7717/peerj.12815 PubMed 35116200

January 20, 2022

Convergent molecular evolution of phosphoenolpyruvate carboxylase gene family in C₄ and crassulacean acid metabolism plants

Jiang-Ping Shu, Yue-Hong Yan, Rui-Jiang Wang

https://doi.org/10.7717/peerj.12828 PubMed 35116203

January 20, 2022

Fast, low-memory detection and localization of large, polymorphic inversions from SNPs

Ronald J. Nowling, Fabian Fallas-Moya, Amir Sadovnik, Scott Emrich, Matthew Aleck, Daniel Leskiewicz, John G. Peters

https://doi.org/10.7717/peerj.12831 PubMed 35116204

January 27, 2022

Metabarcoding of the phytotelmata of Pseudalcantarea grandis (Bromeliaceae) from an arid zone

José Alan Herrera-García, Mahinda Martinez, Pilar Zamora-Tavares, Ofelia Vargas-Ponce, Luis Hernández-Sandoval, Fabián Alejandro Rodríguez-Zaragoza

https://doi.org/10.7717/peerj.12706 PubMed 35127281

January 3, 2022

Genome-wide identification and characterization of the CLASP_N gene family in upland cotton (Gossypium hirsutum L.)

Meijun Ji, Kangtai Sun, Hui Fang, Zhimin Zhuang, Haodong Chen, Qi Chen, Ziyi Cao, Yiting Wang, Allah Ditta, Muhammad Kashif Riaz Khan, Kai Wang, Baohua Wang

https://doi.org/10.7717/peerj.12733 PubMed 35036102

January 13, 2022

Identifying changes in immune cells and constructing prognostic models using immune-related genes in post-burn immunosuppression

Peng Wang, Zexin Zhang, Bin Yin, Jiayuan Li, Cheng Xialin, Wenqin Lian, Yingjun Su, Chiyu Jia

https://doi.org/10.7717/peerj.12680 PubMed 35070500

January 12, 2022

Differences in the expression profiles of lncRNAs and mRNAs in partially injured anterior cruciate ligament and medial collateral ligament of rabbits

Huining Gu, Siyuan Chen, Mingzheng Zhang, Yu Wen, Bin Li

https://doi.org/10.7717/peerj.12781 PubMed 35070509