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July 2021

Table of Contents - PeerJ (Biology Articles)

July 27, 2021

PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly

Maxime Borry, Alexander Hübner, Adam B. Rohrlach, Christina Warinner

https://doi.org/10.7717/peerj.11845 PubMed 34395085

July 26, 2021

Genomics pipelines to investigate susceptibility in whole genome and exome sequenced data for variant discovery, annotation, prediction and genotyping

Zeeshan Ahmed, Eduard Gibert Renart, Saman Zeeshan

https://doi.org/10.7717/peerj.11724 PubMed 34395068

July 23, 2021

Genome-wide identification of alcohol dehydrogenase (ADH) gene family under waterlogging stress in wheat (Triticum aestivum)

Changwei Shen, Jingping Yuan, Xingqi Ou, Xiujuan Ren, Xinhua Li

https://doi.org/10.7717/peerj.11861 PubMed 34386306

July 22, 2021

Genome-wide identification and analysis of the YABBY gene family in Moso Bamboo (Phyllostachys edulis (Carrière) J. Houz)

Ruifang Ma, Bin Huang, Zhinuo Huang, Zhijun Zhang

https://doi.org/10.7717/peerj.11780 PubMed 34327057

July 13, 2021

Effect of genetic background on the evolution of Vancomycin-Intermediate Staphylococcus aureus (VISA)

Michelle Su, Michelle H. Davis, Jessica Peterson, Claudia Solis-Lemus, Sarah W. Satola, Timothy D. Read

https://doi.org/10.7717/peerj.11764 PubMed 34306830

July 21, 2021

Co-expression network and comparative transcriptome analysis for fiber initiation and elongation reveal genetic differences in two lines from upland cotton CCRI70 RIL population

Xiao Jiang, Liqiang Fan, Pengtao Li, Xianyan Zou, Zhen Zhang, Senmiao Fan, Juwu Gong, Youlu Yuan, Haihong Shang

https://doi.org/10.7717/peerj.11812 PubMed 34327061

July 29, 2021

Transcriptional landscape in rat intestines under hypobaric hypoxia

Liuyang Tian, Zhilong Jia, Zhenguo Xu, Jinlong Shi, XiaoJing Zhao, Kunlun He

https://doi.org/10.7717/peerj.11823 PubMed 34395078

July 27, 2021

Genome-wide association study of yield components in spring wheat collection harvested under two water regimes in Northern Kazakhstan

Akerke Amalova, Saule Abugalieva, Adylkhan Babkenov, Sandukash Babkenova, Yerlan Turuspekov

https://doi.org/10.7717/peerj.11857 PubMed 34395089

July 21, 2021

The effects of genetic drift and genomic selection on differentiation and local adaptation of the introduced populations of Aedes albopictus in southern Russia

Evgenii A. Konorov, Vyacheslav Yurchenko, Ivan Patraman, Alexander Lukashev, Nadezhda Oyun

https://doi.org/10.7717/peerj.11776 PubMed 34327056

July 15, 2021

Single molecule, full-length transcript sequencing provides insight into the TPS gene family in Paeonia ostii

Jing Sun, Tian Chen, Jun Tao

https://doi.org/10.7717/peerj.11808 PubMed 34316413

July 15, 2021

Genome-wide identification of candidate aquaporins involved in water accumulation of pomegranate outer seed coat

Jianjian Liu, Gaihua Qin, Chunyan Liu, Xiuli Liu, Jie Zhou, Jiyu Li, Bingxin Lu, Jianrong Zhao

https://doi.org/10.7717/peerj.11810 PubMed 34316414

July 26, 2021

ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences

Dylan Catlett, Kevin Son, Connie Liang

https://doi.org/10.7717/peerj.11865 PubMed 34395092

July 28, 2021

A genomic perspective on the potential of termite-associated Cellulosimicrobium cellulans MP1 as producer of plant biomass-acting enzymes and exopolysaccharides

Nguyen Thi-Hanh Vu, Tung Ngoc Quach, Xuan Thi-Thanh Dao, Ha Thanh Le, Chi Phuong Le, Lam Tung Nguyen, Lam Tung Le, Cuong Cao Ngo, Ha Hoang, Ha Hoang Chu, Quyet-Tien Phi

https://doi.org/10.7717/peerj.11839 PubMed 34395081

July 1, 2021

Analysis of ceRNA network of differentially expressed genes in FaDu cell line and a cisplatin-resistant line derived from it

Gehou Zhang, Guolin Tan, Tieqi Li, Jingang Ai, Yexun Song, Zheng Zhou, Jian Xiao, Wei Li

https://doi.org/10.7717/peerj.11645 PubMed 34249502

July 1, 2021

In silico-driven analysis of the Glossina morsitans morsitans antennae transcriptome in response to repellent or attractant compounds

Consolata Gakii, Billiah Kemunto Bwana, Grace Gathoni Mugambi, Esther Mukoya, Paul O. Mireji, Richard Rimiru

https://doi.org/10.7717/peerj.11691 PubMed 34249514

July 9, 2021

Short-term high fat diet alters genes associated with metabolic and vascular dysfunction during adolescence in rats: a pilot study

Alex E. Mohr, Rebecca A. Reiss, Monique Beaudet, Johnny Sena, Jay S. Naik, Benjimen R. Walker, Karen L. Sweazea

https://doi.org/10.7717/peerj.11714 PubMed 34285833

July 14, 2021

Identification of consistent post-translational regulatory triplets related to oncogenic and tumour suppressive modulators in childhood acute lymphoblastic leukemia

YongKiat Wee, Yining Liu, Min Zhao

https://doi.org/10.7717/peerj.11803 PubMed 34316412

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