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November 2020

Table of Contents - PeerJ (Biology Articles)

November 26, 2020

The m6A reader protein YTHDC2 is a potential biomarker and associated with immune infiltration in head and neck squamous cell carcinoma

Yang Li, Ji-Na Zheng, En-Hao Wang, Chan-Juan Gong, Keng-Fu Lan, XiaoJun Ding

https://doi.org/10.7717/peerj.10385 PubMed 33304653

November 9, 2020

Integrated analysis of lncRNA and mRNA reveals novel insights into cashmere fineness in Tibetan cashmere goats

Xuefeng Fu, Bingru Zhao, Kechuan Tian, Yujiang Wu, Langda Suo, Gui Ba, Deji Ciren, Ji De, Cuoji Awang, Shuangbao Gun, Bohui Yang

https://doi.org/10.7717/peerj.10217 PubMed 33240606

November 27, 2020

Adaptive evolution at mRNA editing sites in soft-bodied cephalopods

Mikhail Moldovan, Zoe Chervontseva, Georgii Bazykin, Mikhail S. Gelfand

https://doi.org/10.7717/peerj.10456 PubMed 33312772

November 4, 2020

Silicon flow from root to shoot in pepper: a comprehensive in silico analysis reveals a potential linkage between gene expression and hormone signaling that stimulates plant growth and metabolism

Fernando Carlos Gómez-Merino, Libia Iris Trejo-Téllez, Atonaltzin García-Jiménez, Hugo Fernando Escobar-Sepúlveda, Sara Monzerrat Ramírez-Olvera

https://doi.org/10.7717/peerj.10053 PubMed 33194376

November 5, 2020

BiSCoT: improving large eukaryotic genome assemblies with optical maps

Benjamin Istace, Caroline Belser, Jean-Marc Aury

https://doi.org/10.7717/peerj.10150 PubMed 33194395

November 6, 2020

De novo transcriptome analysis of Cnidium monnieri (L.) Cuss and detection of genes related to coumarin biosynthesis

Yuanyuan Shi, Shengxiang Zhang, Daiyin Peng, Chunmiao Shan, Liqiang Zhao, Bin Wang, Jiawen Wu

https://doi.org/10.7717/peerj.10157 PubMed 33194397

November 2, 2020

Transcriptome and gene expression analysis of Rhynchophorus ferrugineus (Coleoptera: Curculionidae) during developmental stages

Hongjun Yang, Danping Xu, Zhihang Zhuo, Jiameng Hu, Baoqian Lu

https://doi.org/10.7717/peerj.10223 PubMed 33194414

November 9, 2020

MutRank: an R shiny web-application for exploratory targeted mutual rank-based coexpression analyses integrated with user-provided supporting information

Elly Poretsky, Alisa Huffaker

https://doi.org/10.7717/peerj.10264 PubMed 33240618

November 11, 2020

The complete mitochondrial genome of Gyps coprotheres (Aves, Accipitridae, Accipitriformes): phylogenetic analysis of mitogenome among raptors

Emmanuel Oluwasegun Adawaren, Morne Du Plessis, Essa Suleman, Duodane Kindler, Almero O. Oosthuizen, Lillian Mukandiwa, Vinny Naidoo

https://doi.org/10.7717/peerj.10034 PubMed 33240589

November 18, 2020

Adaptive divergence, neutral panmixia, and algal symbiont population structure in the temperate coral Astrangia poculata along the Mid-Atlantic United States

Hannah E. Aichelman, Daniel J. Barshis

https://doi.org/10.7717/peerj.10201 PubMed 33240603

November 17, 2020

Short stature and SHOX (Short stature homeobox) variants—efficacy of screening using various strategies

Pavlina Capkova, Zuzana Capkova, Peter Rohon, Katerina Adamová, Jirina Zapletalova

https://doi.org/10.7717/peerj.10236 PubMed 33240610

November 12, 2020

High-quality genome assembly of Metaphire vulgaris

Feng Jin, Zhaoli Zhou, Qi Guo, Zhenwen Liang, Ruoyu Yang, Jibao Jiang, Yanlin He, Qi Zhao, Qiang Zhao

https://doi.org/10.7717/peerj.10313 PubMed 33240640

November 20, 2020

Identification of hub genes associated with the pathogenesis of diffuse large B-cell lymphoma subtype one characterized by host response via integrated bioinformatic analyses

Lingna Zhou, Liya Ding, Yuqi Gong, Jing Zhao, Gong Xin, Ren Zhou, Wei Zhang

https://doi.org/10.7717/peerj.10269 PubMed 33240622

November 20, 2020

Genomic characterization and phylogenetic analysis of Salmonella enterica serovar Javiana

Lauren K. Hudson, Lisha Constantine-Renna, Linda Thomas, Christina Moore, Xiaorong Qian, Katie Garman, John R. Dunn, Thomas G. Denes

https://doi.org/10.7717/peerj.10256 PubMed 33240617

November 25, 2020

Evolutionary analysis of chloroplast tRNA of Gymnosperm revealed the novel structural variation and evolutionary aspect

Ting-Ting Zhang, Yi-Kun Hou, Ting Yang, Shu-Ya Zhang, Ming Yue, Jianni Liu, Zhonghu Li

https://doi.org/10.7717/peerj.10312 PubMed 33304650

November 20, 2020

Genome-wide identification and analysis of the thiolase family in insects

Shou-Min Fang

https://doi.org/10.7717/peerj.10393 PubMed 33240678

November 12, 2020

The rs78378222 prevalence and the copy loss of the protective allele A in the tumor tissue of diffuse large B-cell lymphoma

Elena N. Voropaeva, Yuriy L. Orlov, Tatiana I. Pospelova, Anna A. Gurageva, Mikhail I. Voevoda, Vladimir N. Maksimov, Olga B. Seregina, Maria I. Churkina

https://doi.org/10.7717/peerj.10335 PubMed 33240649

November 4, 2020

A model of k-mer surprisal to quantify local sequence information content surrounding splice regions

Sam Humphrey, Alastair Kerr, Magnus Rattray, Caroline Dive, Crispin J. Miller

https://doi.org/10.7717/peerj.10063 PubMed 33194378

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