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July 2020

Table of Contents - PeerJ (Biology Articles)

July 29, 2020

Altered gut microbiota associated with symptom severity in schizophrenia

Shijia Li, Min Zhuo, Xia Huang, Yuanyuan Huang, Jing Zhou, Dongsheng Xiong, Jiahui Li, Ya Liu, Zhilin Pan, Hehua Li, Jun Chen, Xiaobo Li, Zhiming Xiang, Fengchun Wu, Kai Wu

https://doi.org/10.7717/peerj.9574 PubMed 32821537

July 21, 2020

RdRp mutations are associated with SARS-CoV-2 genome evolution

Doğa Eskier, Gökhan Karakülah, Aslı Suner, Yavuz Oktay

https://doi.org/10.7717/peerj.9587 PubMed 32742818

July 23, 2020

Plastid genomics of Nicotiana (Solanaceae): insights into molecular evolution, positive selection and the origin of the maternal genome of Aztec tobacco (Nicotiana rustica)

Furrukh Mehmood, Abdullah, Zartasha Ubaid, Iram Shahzadi, Ibrar Ahmed, Mohammad Tahir Waheed, Peter Poczai, Bushra Mirza

https://doi.org/10.7717/peerj.9552 PubMed 32775052

July 10, 2020

Arthropod IGF, relaxin and gonadulin, putative orthologs of Drosophila insulin-like peptides 6, 7 and 8, likely originated from an ancient gene triplication

Jan A. Veenstra

https://doi.org/10.7717/peerj.9534 PubMed 32728497

July 24, 2020

The effects of humic substances on DNA isolation from soils

Ewa Wnuk, Adam Waśko, Anna Walkiewicz, Piotr Bartmiński, Romualda Bejger, Lilla Mielnik, Andrzej Bieganowski

https://doi.org/10.7717/peerj.9378 PubMed 32775047

July 28, 2020

Differential expression between drought-tolerant and drought-sensitive sugarcane under mild and moderate water stress as revealed by a comparative analysis of leaf transcriptome

Wanapinun Nawae, Jeremy R. Shearman, Sithichoke Tangphatsornruang, Prapat Punpee, Thippawan Yoocha, Duangjai Sangsrakru, Chaiwat Naktang, Chutima Sonthirod, Warodom Wirojsirasak, Kittipat Ukoskit, Klanarong Sriroth, Peeraya Klomsa-ard, Wirulda Pootakham

https://doi.org/10.7717/peerj.9608 PubMed 33240580

July 8, 2020

Very few sites can reshape the inferred phylogenetic tree

Warren R. Francis, Donald E. Canfield

https://doi.org/10.7717/peerj.8865 PubMed 32714649

July 17, 2020

Understanding genomic diversity, pan-genome, and evolution of SARS-CoV-2

Arohi Parlikar, Kishan Kalia, Shruti Sinha, Sucheta Patnaik, Neeraj Sharma, Sai Gayatri Vemuri, Gaurav Sharma

https://doi.org/10.7717/peerj.9576 PubMed 32742815

July 17, 2020

Genome-wide identification and expression profiles of ERF subfamily transcription factors in Zea mays

Lidong Hao, Shubing Shi, Haibin Guo, Ming Li, Pan Hu, Yadong Wei, Yanfei Feng

https://doi.org/10.7717/peerj.9551 PubMed 32742811

July 3, 2020

A comparative analysis of the complete chloroplast genomes of three Chrysanthemum boreale strains

Swati Tyagi, Jae-A Jung, Jung Sun Kim, So Youn Won

https://doi.org/10.7717/peerj.9448 PubMed 32685287

July 13, 2020

Plastome comparative genomics in maples resolves the infrageneric backbone relationships

Fabiola Areces-Berazain, Yixi Wang, Damien D. Hinsinger, Joeri S. Strijk

https://doi.org/10.7717/peerj.9483 PubMed 32742784

July 3, 2020

Genome-wide analysis of basic helix-loop-helix transcription factors in papaya (Carica papaya L.)

Min Yang, Chenping Zhou, Hu Yang, Ruibin Kuang, Bingxiong Huang, Yuerong Wei

https://doi.org/10.7717/peerj.9319 PubMed 32704439

July 7, 2020

Integrating population genetic structure, microbiome, and pathogens presence data in Dermacentor variabilis

Paula Lado, Bo Luan, Michelle E.J. Allerdice, Christopher D. Paddock, Sandor E. Karpathy, Hans Klompen

https://doi.org/10.7717/peerj.9367 PubMed 32704442

July 21, 2020

An RNA-sequencing-based transcriptome for a significantly prognostic novel driver signature identification in bladder urothelial carcinoma

Danqi Liu, Boting Zhou, Rangru Liu

https://doi.org/10.7717/peerj.9422 PubMed 32742772

July 16, 2020

Whole mitochondrial genome sequence and phylogenetic relationships of Williams’s jerboa (Scarturus williamsi) from Turkey

Osman İbiş

https://doi.org/10.7717/peerj.9569 PubMed 32742814

July 14, 2020

Identification of potential biomarkers and their clinical significance in gastric cancer using bioinformatics analysis methods

Jie Liu, Miao Zhou, Yangyang Ouyang, Laifeng Du, Lingbo Xu, Hongyun Li

https://doi.org/10.7717/peerj.9174 PubMed 33062405

July 28, 2020

Five genes influenced by obesity may contribute to the development of thyroid cancer through the regulation of insulin levels

Jiaming Chen, Hongbao Cao, Meng Lian, Jugao Fang

https://doi.org/10.7717/peerj.9302 PubMed 33240576

July 2, 2020

SSREnricher: a computational approach for large-scale identification of polymorphic microsatellites based on comparative transcriptome analysis

Wei Luo, Qing Wu, Lan Yang, Pengyu Chen, Siqi Yang, Tianzhu Wang, Yan Wang, Zongjun Du

https://doi.org/10.7717/peerj.9372 PubMed 32676221

July 29, 2020

Genome-wide Cas9 binding specificity in Saccharomyces cerevisiae

Zachary J. Waldrip, Piroon Jenjaroenpun, Oktawia DeYoung, Intawat Nookaew, Sean D. Taverna, Kevin D. Raney, Alan J. Tackett

https://doi.org/10.7717/peerj.9442 PubMed 32821531

July 21, 2020

Genotypic characterization and genome comparison reveal insights into potential vaccine coverage and genealogy of Neisseria meningitidis in military camps in Vietnam

Trang Thu Le, Thach Xuan Tran, Long Phi Trieu, Christopher M. Austin, Huong Minh Nguyen, Dong Van Quyen

https://doi.org/10.7717/peerj.9502 PubMed 32742791

July 21, 2020

The regulatory genome constrains protein sequence evolution: implications for the search for disease-associated genes

Patrick Evans, Nancy J. Cox, Eric R. Gamazon

https://doi.org/10.7717/peerj.9554 PubMed 32765967

July 31, 2020

Functional characterization of the chlorzoxazone 6-hydroxylation activity of human cytochrome P450 2E1 allelic variants in Han Chinese

Ting Wang, Huihui Du, Jingsong Ma, Lu Shen, Muyun Wei, Xianglong Zhao, Luan Chen, Mo Li, Guorong Li, Qinghe Xing, Lin He, Shengying Qin

https://doi.org/10.7717/peerj.9628 PubMed 32821545

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