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November 2019

Table of Contents - PeerJ (Biology Articles)

November 19, 2019

Genome-wide identification and transcriptional expression analysis of superoxide dismutase (SOD) family in wheat (Triticum aestivum)

Wenqiang Jiang, Lei Yang, Yiqin He, Haotian Zhang, Wei Li, Huaigu Chen, Dongfang Ma, Junliang Yin

https://doi.org/10.7717/peerj.8062 PubMed 31763072

November 29, 2019

Identification of prognostic gene signature associated with microenvironment of lung adenocarcinoma

Cheng Yue, Hongtao Ma, Yubai Zhou

https://doi.org/10.7717/peerj.8128 PubMed 31803536

November 29, 2019

Characterization and expression profiling of the ICE-CBF-COR genes in wheat

Jie Guo, Yongkang Ren, Zhaohui Tang, Weiping Shi, Meixue Zhou

https://doi.org/10.7717/peerj.8190 PubMed 31803544

November 25, 2019

Genome-wide identification of C2H2 zinc-finger genes and their expression patterns under heat stress in tomato (Solanum lycopersicum L.)

Xin Hu, Lili Zhu, Yi Zhang, Li Xu, Na Li, Xingguo Zhang, Yu Pan

https://doi.org/10.7717/peerj.7929 PubMed 31788352

November 7, 2019

Genome-wide identification and characterization of the MADS-box gene family in Salix suchowensis

Yanshu Qu, Changwei Bi, Bing He, Ning Ye, Tongming Yin, Li-an Xu

https://doi.org/10.7717/peerj.8019 PubMed 31720123

November 1, 2019

Identification of key genes and long non-coding RNA associated ceRNA networks in hepatocellular carcinoma

Jun Liu, Wenli Li, Jian Zhang, Zhanzhong Ma, Xiaoyan Wu, Lirui Tang

https://doi.org/10.7717/peerj.8021 PubMed 31695969

November 27, 2019

Comparative proteomic analysis of pepper (Capsicum annuum L.) seedlings under selenium stress

Chenghao Zhang, Baoyu Xu, Wei Geng, Yunde Shen, Dongji Xuan, Qixian Lai, Chenjia Shen, Chengwu Jin, Chenliang Yu

https://doi.org/10.7717/peerj.8020 PubMed 31799069

November 7, 2019

Competing endogenous RNA (ceRNA) hypothetic model based on comprehensive analysis of long non-coding RNA expression in lung adenocarcinoma

Xiwen Wang, Rui Su, Qiqiang Guo, Jia Liu, Banlai Ruan, Guiling Wang

https://doi.org/10.7717/peerj.8024 PubMed 31720124

November 1, 2019

The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species

Ruchishree Konhar, Manish Debnath, Santosh Vishwakarma, Atanu Bhattacharjee, Durai Sundar, Pramod Tandon, Debasis Dash, Devendra Kumar Biswal

https://doi.org/10.7717/peerj.7756 PubMed 31695964

November 7, 2019

Genome-wide analysis of transcription factors related to anthocyanin biosynthesis in carmine radish (Raphanus sativus L.) fleshy roots

Jian Gao, Hua Peng, Fabo Chen, Mao Luo, Wenbo Li

https://doi.org/10.7717/peerj.8041 PubMed 31720127

November 26, 2019

Bioinformatic analysis identifies potentially key differentially expressed genes in oncogenesis and progression of clear cell renal cell carcinoma

Haiping Zhang, Jian Zou, Ying Yin, Bo Zhang, Yaling Hu, Jingjing Wang, Huijun Mu

https://doi.org/10.7717/peerj.8096 PubMed 31788359

November 5, 2019

Systematic analysis of NAC transcription factors in Gossypium barbadense uncovers their roles in response to Verticillium wilt

Zhanji Liu, Mingchuan Fu, Hao Li, Yizhen Chen, Liguo Wang, Renzhong Liu

https://doi.org/10.7717/peerj.7995 PubMed 31720116

November 1, 2019

TransPrise: a novel machine learning approach for eukaryotic promoter prediction

Stepan Pachganov, Khalimat Murtazalieva, Aleksei Zarubin, Dmitry Sokolov, Duane R. Chartier, Tatiana V. Tatarinova

https://doi.org/10.7717/peerj.7990 PubMed 31695967

November 13, 2019

Prediction of clusters of miRNA binding sites in mRNA candidate genes of breast cancer subtypes

Dana Aisina, Raigul Niyazova, Shara Atambayeva, Anatoliy Ivashchenko

https://doi.org/10.7717/peerj.8049 PubMed 31741798

November 19, 2019

Low expression or hypermethylation of PLK2 might predict favorable prognosis for patients with glioblastoma multiforme

Xiangping Xia, Fang Cao, Xiaolu Yuan, Qiang Zhang, Wei Chen, Yunhu Yu, Hua Xiao, Chong Han, Shengtao Yao

https://doi.org/10.7717/peerj.7974 PubMed 31763067

November 5, 2019

L-cysteine transporter-PCR to detect hydrogen sulfide-producing Campylobacter fetus

Pablo D. Farace, Claudia G. Morsella, Silvio L. Cravero, Bernardo A. Sioya, Ariel F. Amadio, Fernando A. Paolicchi, Andrea K. Gioffré

https://doi.org/10.7717/peerj.7820 PubMed 31720099

November 27, 2019

Evaluation of performance of leading algorithms for variant pathogenicity predictions and designing a combinatory predictor method: application to Rett syndrome variants

Satishkumar Ranganathan Ganakammal, Emil Alexov

https://doi.org/10.7717/peerj.8106 PubMed 31799076

November 21, 2019

From command-line bioinformatics to bioGUI

Markus Joppich, Ralf Zimmer

https://doi.org/10.7717/peerj.8111 PubMed 31772845

November 29, 2019

Screening and identification of key candidate genes and pathways in myelodysplastic syndrome by bioinformatic analysis

Ying Le

https://doi.org/10.7717/peerj.8162 PubMed 31803541

November 29, 2019

Stress-induced changes in the expression of antioxidant system genes for rice (Oryza sativa L.) and bread wheat (Triticum aestivum L.)

Anton Ermakov, Aleksandr Bobrovskikh, Ulyana Zubairova, Dmitrii Konstantinov, Alexey Doroshkov

https://doi.org/10.7717/peerj.7791 PubMed 31803533

November 13, 2019

Identification of genes and functional coexpression modules closely related to ulcerative colitis by gene datasets analysis

Jie Zhu, Zheng Wang, Fengzhe Chen, Changhong Liu

https://doi.org/10.7717/peerj.8061 PubMed 31741804

November 22, 2019

Comprehensive analysis of differentially expressed microRNAs and mRNAs in MDBK cells expressing bovine papillomavirus E5 oncogene

Feng Pang, Zhen Chen, Chengqiang Wang, Mengmeng Zhang, Zhenxing Zhang, Xiaohong Yang, Yiying Zheng, Ang Liu, Yiwen Cheng, Jie Chen, Bin Li, Li Du, Fengyang Wang

https://doi.org/10.7717/peerj.8098 PubMed 31772843

November 11, 2019

Genomic analyses provide insights into breed-of-origin effects from purebreds on three-way crossbred pigs

Yu Lin, Qianzi Tang, Yan Li, Mengnan He, Long Jin, Jideng Ma, Xun Wang, Keren Long, Zhiqing Huang, Xuewei Li, Yiren Gu, Mingzhou Li

https://doi.org/10.7717/peerj.8009 PubMed 31737448

November 7, 2019

Classifying Oryza sativa accessions into Indica and Japonica using logistic regression model with phenotypic data

Bongsong Kim

https://doi.org/10.7717/peerj.7259 PubMed 31720092

November 15, 2019

Identification of novel BRCA1 large genomic rearrangements by a computational algorithm of amplicon-based Next-Generation Sequencing data

Arianna Nicolussi, Francesca Belardinilli, Valentina Silvestri, Yasaman Mahdavian, Virginia Valentini, Sonia D’Inzeo, Marialaura Petroni, Massimo Zani, Sergio Ferraro, Stefano Di Giulio, Francesca Fabretti, Beatrice Fratini, Angela Gradilone, Laura Ottini, Giuseppe Giannini, Anna Coppa, Carlo Capalbo

https://doi.org/10.7717/peerj.7972 PubMed 31741787

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