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September 2019

Table of Contents - PeerJ (Biology Articles)

September 19, 2019

Identification and characterization of circRNAs as competing endogenous RNAs for miRNA-mRNA in colorectal cancer

Wenliang Yuan, Sihua Peng, Jingyu Wang, Cai Wei, Zhen Ye, Ye Wang, Meiliang Wang, Hao Xu, Shouwen Jiang, Dan Sun, Chaoxu Dai, Linhua Jiang, Xiaobo Li

https://doi.org/10.7717/peerj.7602 PubMed 31579577

September 5, 2019

The complete mitochondrial genomes of five longicorn beetles (Coleoptera: Cerambycidae) and phylogenetic relationships within Cerambycidae

Jun Wang, Xin-Yi Dai, Xiao-Dong Xu, Zi-Yi Zhang, Dan-Na Yu, Kenneth B. Storey, Jia-Yong Zhang

https://doi.org/10.7717/peerj.7633 PubMed 31534857

September 16, 2019

AURKB: a promising biomarker in clear cell renal cell carcinoma

Bangbei Wan, Yuan Huang, Bo Liu, Likui Lu, Cai Lv

https://doi.org/10.7717/peerj.7718 PubMed 31576249

September 24, 2019

ViralPlaque: a Fiji macro for automated assessment of viral plaque statistics

Marco Cacciabue, Anabella Currá, Maria I. Gismondi

https://doi.org/10.7717/peerj.7729 PubMed 31579606

September 6, 2019

Differential mechanisms underlying responses of soil bacterial and fungal communities to nitrogen and phosphorus inputs in a subtropical forest

Yong Li, Dashuan Tian, Jinsong Wang, Shuli Niu, Jing Tian, Denglong Ha, Yuxi Qu, Guangwei Jing, Xiaoming Kang, Bing Song

https://doi.org/10.7717/peerj.7631 PubMed 31534856

September 24, 2019

The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics

Dyfed Lloyd Evans, Thandekile Thandiwe Hlongwane, Shailesh V. Joshi, Diego M. Riaño Pachón

https://doi.org/10.7717/peerj.7558 PubMed 31579570

September 10, 2019

lncRNA TMEM51-AS1 and RUSC1-AS1 function as ceRNAs for induction of laryngeal squamous cell carcinoma and prediction of prognosis

Lian Hui, Jing Wang, Jialiang Zhang, Jin Long

https://doi.org/10.7717/peerj.7456 PubMed 31565549

September 6, 2019

Crucial lncRNAs associated with adipocyte differentiation from human adipose-derived stem cells based on co-expression and ceRNA network analyses

Kana Chen, Shujie Xie, Wujun Jin

https://doi.org/10.7717/peerj.7544 PubMed 31534842

September 12, 2019

Genome-wide identification of growth-regulating factors in moso bamboo (Phyllostachys edulis): in silico and experimental analyses

Yanan Shi, Huanlong Liu, Yameng Gao, Yujiao Wang, Min Wu, Yan Xiang

https://doi.org/10.7717/peerj.7510 PubMed 31579567

September 19, 2019

Identification of pivotal lncRNAs in papillary thyroid cancer using lncRNA–mRNA–miRNA ceRNA network analysis

Weiwei Liang, Fangfang Sun

https://doi.org/10.7717/peerj.7441 PubMed 31579562

September 20, 2019

Complete chloroplast genome sequence of the mangrove species Kandelia obovata and comparative analyses with related species

Yong Yang, Ying Zhang, Yukai Chen, Juma Gul, Jingwen Zhang, Qiang Liu, Qing Chen

https://doi.org/10.7717/peerj.7713 PubMed 31579601

September 17, 2019

Identification of lncRNAs associated with lung squamous cell carcinoma prognosis in the competitive endogenous RNA network

Lingyu Qi, Tingting Zhang, Yan Yao, Jing Zhuang, Cun Liu, Ruijuan Liu, Changgang Sun

https://doi.org/10.7717/peerj.7727 PubMed 31576252

September 20, 2019

Role of miR-10b-5p in the prognosis of breast cancer

Junmin Wang, Yanyun Yan, Zhiqi Zhang, Yali Li

https://doi.org/10.7717/peerj.7728 PubMed 31579605

September 9, 2019

Characterization of ceRNA network to reveal potential prognostic biomarkers in triple-negative breast cancer

Xiang Song, Chao Zhang, Zhaoyun Liu, Qi Liu, Kewen He, Zhiyong Yu

https://doi.org/10.7717/peerj.7522 PubMed 31565554

September 6, 2019

Identification of Flap endonuclease 1 as a potential core gene in hepatocellular carcinoma by integrated bioinformatics analysis

Chuanfei Li, Feng Qin, Hao Hong, Hui Tang, Xiaoling Jiang, Shuangyan Yang, Zhechuan Mei, Di Zhou

https://doi.org/10.7717/peerj.7619 PubMed 31534853

September 2, 2019

Proteomics and bioinformatics analysis reveal potential roles of cadmium-binding proteins in cadmium tolerance and accumulation of Enterobacter cloacae

Kitipong Chuanboon, Piyada Na Nakorn, Supitcha Pannengpetch, Vishuda Laengsri, Pornlada Nuchnoi, Chartchalerm Isarankura-Na-Ayudhya, Patcharee Isarankura-Na-Ayudhya

https://doi.org/10.7717/peerj.6904 PubMed 31534833

September 26, 2019

Simulated manned Mars exploration: effects of dietary and diurnal cycle variations on the gut microbiome of crew members in a controlled ecological life support system

Hai-Sheng Dong, Pu Chen, Yan-Bo Yu, Peng Zang, Zhao Wei

https://doi.org/10.7717/peerj.7762 PubMed 31579622

September 16, 2019

Nomogram for predicting cancer specific survival in inflammatory breast carcinoma: a SEER population-based study

Haige Zhang, Guifen Ma, Shisuo Du, Jing Sun, Qian Zhang, Baoying Yuan, Xiaoyong Luo

https://doi.org/10.7717/peerj.7659 PubMed 31576238

September 17, 2019

Urine proteome changes in rats subcutaneously inoculated with approximately ten tumor cells

Jing Wei, Wenshu Meng, Youhe Gao

https://doi.org/10.7717/peerj.7717 PubMed 31576248

September 12, 2019

Genome-wide characterization and expression analysis of aquaporins in salt cress (Eutrema salsugineum)

Weiguo Qian, Xiaomin Yang, Jiawen Li, Rui Luo, Xiufeng Yan, Qiuying Pang

https://doi.org/10.7717/peerj.7664 PubMed 31565576

September 30, 2019

Computational analysis of functional SNPs in Alzheimer’s disease-associated endocytosis genes

Han Jieh Tey, Chong Han Ng

https://doi.org/10.7717/peerj.7667 PubMed 31592138

September 16, 2019

Engrailed 1 overexpression as a potential prognostic marker in Lower Grade Glioma

Jin Zhu, Yu-Qi Zhang

https://doi.org/10.7717/peerj.7414 PubMed 31576231

September 13, 2019

Analysis of small RNA changes in different Brassica napus synthetic allopolyploids

Yunxiao Wei, Fei Li, Shujiang Zhang, Shifan Zhang, Hui Zhang, Rifei Sun

https://doi.org/10.7717/peerj.7621 PubMed 31565564

September 17, 2019

The co-expression networks of differentially expressed RBPs with TFs and LncRNAs related to clinical TNM stages of cancers

Shuaibin Lian, Liansheng Li, Yongjie Zhou, Zixiao Liu, Lei Wang

https://doi.org/10.7717/peerj.7696 PubMed 31576243

September 13, 2019

EnContact: predicting enhancer-enhancer contacts using sequence-based deep learning model

Mingxin Gan, Wenran Li, Rui Jiang

https://doi.org/10.7717/peerj.7657 PubMed 31565573

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