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April 2019

Table of Contents - PeerJ (Biology Articles)

April 25, 2019

Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands

Joanna Warwick-Dugdale, Natalie Solonenko, Karen Moore, Lauren Chittick, Ann C. Gregory, Michael J. Allen, Matthew B. Sullivan, Ben Temperton

https://doi.org/10.7717/peerj.6800 PubMed 31086738

April 10, 2019

virMine: automated detection of viral sequences from complex metagenomic samples

Andrea Garretto, Thomas Hatzopoulos, Catherine Putonti

https://doi.org/10.7717/peerj.6695 PubMed 30993039

April 29, 2019

Shared genomic outliers across two divergent population clusters of a highly threatened seagrass

Nikki Leanne Phair, Robert John Toonen, Ingrid Knapp, Sophie von der Heyden

https://doi.org/10.7717/peerj.6806 PubMed 31106053

April 1, 2019

Identification of the GRAS gene family in the Brassica juncea genome provides insight into its role in stem swelling in stem mustard

Mengyao Li, Bo Sun, Fangjie Xie, Ronggao Gong, Ya Luo, Fen Zhang, Zesheng Yan, Haoru Tang

https://doi.org/10.7717/peerj.6682 PubMed 30972257

April 22, 2019

Integrated analysis of two-lncRNA signature as a potential prognostic biomarker in cervical cancer: a study based on public database

Wenjuan Wu, Jing Sui, Tong Liu, Sheng Yang, Siyi Xu, Man Zhang, Shaoping Huang, Lihong Yin, Yuepu Pu, Geyu Liang

https://doi.org/10.7717/peerj.6761 PubMed 31065456

April 30, 2019

Biodiversity seen through the perspective of insects: 10 simple rules on methodological choices and experimental design for genomic studies

Pável Matos-Maraví, Camila Duarte Ritter, Christopher J. Barnes, Martin Nielsen, Urban Olsson, Niklas Wahlberg, Daniel Marquina, Ilari Sääksjärvi, Alexandre Antonelli

https://doi.org/10.7717/peerj.6727 PubMed 31106048

April 22, 2019

Next-generation sequencing of BRCA1 and BRCA2 genes for rapid detection of germline mutations in hereditary breast/ovarian cancer

Arianna Nicolussi, Francesca Belardinilli, Yasaman Mahdavian, Valeria Colicchia, Sonia D’Inzeo, Marialaura Petroni, Massimo Zani, Sergio Ferraro, Virginia Valentini, Laura Ottini, Giuseppe Giannini, Carlo Capalbo, Anna Coppa

https://doi.org/10.7717/peerj.6661 PubMed 31065452

April 16, 2019

The synergistic effect of concatenation in phylogenomics: the case in Pantoea

Marike Palmer, Stephanus N. Venter, Alistair R. McTaggart, Martin P.A. Coetzee, Stephanie Van Wyk, Juanita R. Avontuur, Chrizelle W. Beukes, Gerda Fourie, Quentin C. Santana, Magriet A. Van Der Nest, Jochen Blom, Emma T. Steenkamp

https://doi.org/10.7717/peerj.6698 PubMed 31024760

April 1, 2019

Complete plastome sequence of Iodes cirrhosa Turcz., the first in the Icacinaceae, comparative genomic analyses and possible split of Idoes species in response to climate changes

Liqiang Wang, Hui Zhang, Mei Jiang, Haimei Chen, Linfang Huang, Chang Liu

https://doi.org/10.7717/peerj.6663 PubMed 30972252

April 12, 2019

Adaptive and degenerative evolution of the S-Phase Kinase-Associated Protein 1-Like family in Arabidopsis thaliana

Zhihua Hua, Zhenyu Gao

https://doi.org/10.7717/peerj.6740 PubMed 30997292

April 17, 2019

Molecular characterization and phylogenetic analysis of a Squash leaf curl virus isolate from Baja California Sur, Mexico

Diana Medina-Hernández, M. Goretty Caamal-Chan, Mayela Vargas-Salinas, Abraham Loera-Muro, Aarón Barraza, Ramón Jaime Holguín-Peña

https://doi.org/10.7717/peerj.6774 PubMed 31024774

April 22, 2019

MicroRNA profiling of mouse liver in response to DENV-1 infection by deep sequencing

Lian Yih Pong, Sinikka Parkkinen, Amreeta Dhanoa, Han Ming Gan, Indeevari Abisheka Chiharu Wickremesinghe, Sharifah Syed Hassan

https://doi.org/10.7717/peerj.6697 PubMed 31065454

April 10, 2019

MetaMSD: meta analysis for mass spectrometry data

So Young Ryu, George A. Wendt

https://doi.org/10.7717/peerj.6699 PubMed 30993040

April 25, 2019

Forensic characteristics and population genetics of Chinese Kazakh ethnic minority with an efficient STR panel

Chong Chen, Yuxin Guo, Xiaoye Jin, Wei Cui, Yuanyuan Wei, Yating Fang, Qiong Lan, Tingting Kong, Tong Xie, Bofeng Zhu

https://doi.org/10.7717/peerj.6802 PubMed 31086740

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