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January 2018

Table of Contents - PeerJ (Biology Articles)

Refining amino acid hydrophobicity for dynamics simulation of membrane proteins

Figure 4

January 10, 2018

Refining amino acid hydrophobicity for dynamics simulation of membrane proteins

This article describes an improved treatment of membrane proteins and lipid-protein molecular interactions.

January 25, 2018

Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

Tom O. Delmont, A. Murat Eren

https://doi.org/10.7717/peerj.4320 PubMed 29423345

January 12, 2018

FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data

Saima Sultana Tithi, Frank O. Aylward, Roderick V. Jensen, Liqing Zhang

https://doi.org/10.7717/peerj.4227 PubMed 29340239

January 3, 2018

Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak

Jason C. Kwong, Courtney R. Lane, Finn Romanes, Anders Gonçalves da Silva, Marion Easton, Katie Cronin, Mary Jo Waters, Takehiro Tomita, Kerrie Stevens, Mark B. Schultz, Sarah L. Baines, Norelle L. Sherry, Glen P. Carter, Andre Mu, Michelle Sait, Susan A. Ballard, Torsten Seemann, Timothy P. Stinear, Benjamin P. Howden

https://doi.org/10.7717/peerj.4210 PubMed 29312831

January 19, 2018

CoMiniGut—a small volume in vitro colon model for the screening of gut microbial fermentation processes

Maria Wiese, Bekzod Khakimov, Sebastian Nielsen, Helena Sørensen, Frans van den Berg, Dennis Sandris Nielsen

https://doi.org/10.7717/peerj.4268 PubMed 29372119

January 3, 2018

Effect of dark sweet cherry powder consumption on the gut microbiota, short-chain fatty acids, and biomarkers of gut health in obese db/db mice

Jose F. Garcia-Mazcorro, Nara N. Lage, Susanne Mertens-Talcott, Stephen Talcott, Boon Chew, Scot E. Dowd, Jorge R. Kawas, Giuliana D. Noratto

https://doi.org/10.7717/peerj.4195 PubMed 29312822

January 10, 2018

Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory

Anamaria Crisan, Geoffrey McKee, Tamara Munzner, Jennifer L. Gardy

https://doi.org/10.7717/peerj.4218 PubMed 29340235

January 29, 2018

Distribution of bacterial communities along the spatial and environmental gradients from Bohai Sea to northern Yellow Sea

Shu-Xian Yu, Yun-Long Pang, Yin-Chu Wang, Jia-Lin Li, Song Qin

https://doi.org/10.7717/peerj.4272 PubMed 29404208

January 22, 2018

Eukaryotes in the gut microbiota in myalgic encephalomyelitis/chronic fatigue syndrome

Alexandra H. Mandarano, Ludovic Giloteaux, Betsy A. Keller, Susan M. Levine, Maureen R. Hanson

https://doi.org/10.7717/peerj.4282 PubMed 29375937

January 8, 2018

Is there a link between aging and microbiome diversity in exceptional mammalian longevity?

Graham M. Hughes, John Leech, Sébastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling

https://doi.org/10.7717/peerj.4174 PubMed 29333342

January 2, 2018

Profiling of subgingival plaque biofilm microbiota in female adult patients with clear aligners: a three-month prospective study

Runzhi Guo, Yunfei Zheng, Hao Liu, Xiaobei Li, Lingfei Jia, Weiran Li

https://doi.org/10.7717/peerj.4207 PubMed 29312828

January 25, 2018

Molecular and serological dynamics of Chlamydia pecorum infection in a longitudinal study of prime lamb production

Sankhya Bommana, Evelyn Walker, Marion Desclozeaux, Martina Jelocnik, Peter Timms, Adam Polkinghorne, Scott Carver

https://doi.org/10.7717/peerj.4296 PubMed 29379689

January 26, 2018

Remote collection of microorganisms at two depths in a freshwater lake using an unmanned surface vehicle (USV)

Craig Powers, Regina Hanlon, David G. Schmale III

https://doi.org/10.7717/peerj.4290 PubMed 29383287

January 3, 2018

A historical legacy of antibiotic utilization on bacterial seed banks in sediments

Laura Madueño, Christophe Paul, Thomas Junier, Zhanna Bayrychenko, Sevasti Filippidou, Karin Beck, Gilbert Greub, Helmut Bürgmann, Pilar Junier

https://doi.org/10.7717/peerj.4197 PubMed 29312823

January 11, 2018

A streptomycin resistance marker in H. parasuis based on site-directed mutations in rpsL gene to perform unmarked in-frame mutations and to verify natural transformation

Ke Dai, Xintian Wen, Yung-Fu Chang, Sanjie Cao, Qin Zhao, Xiaobo Huang, Rui Wu, Yong Huang, Qigui Yan, Xinfeng Han, Xiaoping Ma, Yiping Wen

https://doi.org/10.7717/peerj.4253 PubMed 29340249

January 5, 2018

On revealing the gene targets of Ebola virus microRNAs involved in the human skin microbiome

Pei-Chun Hsu, Bin-Hao Chiou, Chun-Ming Huang

https://doi.org/10.7717/peerj.4138 PubMed 29312814

January 12, 2018

Response of methane production via propionate oxidation to carboxylated multiwalled carbon nanotubes in paddy soil enrichments

Jianchao Zhang, Xingxuan Xia, Siliang Li, Wei Ran

https://doi.org/10.7717/peerj.4267 PubMed 29340254

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