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January 2018

Table of Contents - PeerJ (Biology Articles)

Refining amino acid hydrophobicity for dynamics simulation of membrane proteins

Figure 4

January 10, 2018

Refining amino acid hydrophobicity for dynamics simulation of membrane proteins

This article describes an improved treatment of membrane proteins and lipid-protein molecular interactions.

January 25, 2018

Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

Tom O. Delmont, A. Murat Eren

https://doi.org/10.7717/peerj.4320 PubMed 29423345

January 31, 2018

Evidence for widespread dysregulation of circadian clock progression in human cancer

Jarrod Shilts, Guanhua Chen, Jacob J. Hughey

https://doi.org/10.7717/peerj.4327 PubMed 29404219

January 12, 2018

FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data

Saima Sultana Tithi, Frank O. Aylward, Roderick V. Jensen, Liqing Zhang

https://doi.org/10.7717/peerj.4227 PubMed 29340239

January 3, 2018

Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak

Jason C. Kwong, Courtney R. Lane, Finn Romanes, Anders Gonçalves da Silva, Marion Easton, Katie Cronin, Mary Jo Waters, Takehiro Tomita, Kerrie Stevens, Mark B. Schultz, Sarah L. Baines, Norelle L. Sherry, Glen P. Carter, Andre Mu, Michelle Sait, Susan A. Ballard, Torsten Seemann, Timothy P. Stinear, Benjamin P. Howden

https://doi.org/10.7717/peerj.4210 PubMed 29312831

January 10, 2018

Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory

Anamaria Crisan, Geoffrey McKee, Tamara Munzner, Jennifer L. Gardy

https://doi.org/10.7717/peerj.4218 PubMed 29340235

January 12, 2018

Integrated genomic analyses of lung squamous cell carcinoma for identification of a possible competitive endogenous RNA network by means of TCGA datasets

Pengbo Ning, Zhongxing Wu, Aoxue Hu, Xuepeng Li, Jun He, Xiaocheng Gong, Yuqiong Xia, Yukui Shang, Huijie Bian

https://doi.org/10.7717/peerj.4254 PubMed 29340250

January 24, 2018

Genomic signal processing for DNA sequence clustering

Gerardo Mendizabal-Ruiz, Israel Román-Godínez, Sulema Torres-Ramos, Ricardo A. Salido-Ruiz, Hugo Vélez-Pérez, J. Alejandro Morales

https://doi.org/10.7717/peerj.4264 PubMed 29379686

January 16, 2018

Population genetic structure of Patagonian toothfish (Dissostichus eleginoides) in the Southeast Pacific and Southwest Atlantic Ocean

Cristian B. Canales-Aguirre, Sandra Ferrada-Fuentes, Ricardo Galleguillos, Fernanda X. Oyarzun, Cristián E. Hernández

https://doi.org/10.7717/peerj.4173 PubMed 29362690

January 29, 2018

Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels

Angela Andaleon, Lauren S. Mogil, Heather E. Wheeler

https://doi.org/10.7717/peerj.4314 PubMed 29404214

January 17, 2018

FUSTr: a tool to find gene families under selection in transcriptomes

T. Jeffrey Cole, Michael S. Brewer

https://doi.org/10.7717/peerj.4234 PubMed 29372116

January 31, 2018

Evaluating the adaptive evolutionary convergence of carnivorous plant taxa through functional genomics

Gregory L. Wheeler, Bryan C. Carstens

https://doi.org/10.7717/peerj.4322 PubMed 29404217

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