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October 2016

Table of Contents - PeerJ (Biology Articles)

Extensive deep coral reefs in Hawaii harbor unique species and high coral cover

Randall Kosaki

October 4, 2016

Extensive deep coral reefs in Hawaii harbor unique species and high coral cover

Scientists report on a 20-year study to comprehensively document mesophotic coral ecosystems throughout the Hawaiian Archipelago.

October 18, 2016

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé

https://doi.org/10.7717/peerj.2584 PubMed 27781170

October 27, 2016

Bone protein “extractomics”: comparing the efficiency of bone protein extractions of Gallus gallus in tandem mass spectrometry, with an eye towards paleoproteomics

Elena R. Schroeter, Caroline J. DeHart, Mary H. Schweitzer, Paul M. Thomas, Neil L. Kelleher

https://doi.org/10.7717/peerj.2603 PubMed 27812413

October 11, 2016

Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA

Daniel G. Mulcahy, Kenneth S. Macdonald, Seán G. Brady, Christopher Meyer, Katharine B. Barker, Jonathan Coddington

https://doi.org/10.7717/peerj.2528 PubMed 27761327

October 4, 2016

Transcriptome response to elevated atmospheric CO₂ concentration in the Formosan subterranean termite, Coptotermes formosanus Shiraki (Isoptera: Rhinotermitidae)

Wenjing Wu, Zhiqiang Li, Shijun Zhang, Yunling Ke, Yahui Hou

https://doi.org/10.7717/peerj.2527 PubMed 27761326

October 18, 2016

The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data

Sandeep J. Joseph, Ben Li, Robert A. Petit III, Zhaohui S. Qin, Lyndsey Darrow, Timothy D. Read

https://doi.org/10.7717/peerj.2571 PubMed 27781166

October 27, 2016

The PARA-suite: PAR-CLIP specific sequence read simulation and processing

Andreas Kloetgen, Arndt Borkhardt, Jessica I. Hoell, Alice C. McHardy

https://doi.org/10.7717/peerj.2619 PubMed 27812418

October 27, 2016

Characterization of a male reproductive transcriptome for Peromyscus eremicus (Cactus mouse)

Lauren L. Kordonowy, Matthew D. MacManes

https://doi.org/10.7717/peerj.2617 PubMed 27812417

October 20, 2016

Formal modeling and analysis of ER-α associated Biological Regulatory Network in breast cancer

Samra Khalid, Rumeza Hanif, Samar H.K. Tareen, Amnah Siddiqa, Zurah Bibi, Jamil Ahmad

https://doi.org/10.7717/peerj.2542 PubMed 27781158

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