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Shibiao Wan
Bronze Contributor
7,500 Points

Contributions by role

Editor 7,500

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Algorithms and Analysis of Algorithms
Artificial Intelligence
Data Mining and Machine Learning
Bioinformatics
Computer Vision
Data Science
Neural Networks
Computational Biology
Natural Language and Speech
Scientific Computing and Simulation
Programming Languages
Software Engineering
Visual Analytics
Human-Computer Interaction
Text Mining
Security and Privacy
Optimization Theory and Computation
Computer Networks and Communications
Emerging Technologies
Computer Aided Design
Multimedia
Graphics
Computer Education
Adaptive and Self-Organizing Systems
Databases
Bronze Contributor

Shibiao Wan

PeerJ Editor

Summary

Dr. Shibiao Wan is currently an Assistant Professor in the Department of Genetics, Cell Biology and Anatomy, and the Co-Director for the Bioinformatics and Systems Biology (BISB) PhD Program at University of Nebraska Medical Center (UNMC). He is also an Assistant Professor (courtesy) in the Department of Biostatistics at UNMC.

With more than 14 years of experience in machine learning, bioinformatics, and computational biology, Dr. Wan has published >50 articles in top-tiered journals such as Genome Research, Nature Communications, Science Advances, Circulation Research, Briefings in Bioinformatics, and Bioinformatics. Dr. Wan is the Editor-in-Chief for Current Proteomics, and an Editorial Board Member for a series of prestigious journals such as Briefings in Functional Genomics, Heliyon, BMC Bioinformatics, International Journal of Microbiology, PeerJ Computer Science, BioMed Research International, and Computational and Mathematical Methods, and a guest associate editor for multiple high-impact journals including Frontiers in Immunology, Frontiers in Cell and Developmental Biology, Frontiers in Pharmacology, Biology, Frontiers in Genetics, and Genes.

Dr Wan is a TPC member for >20 machine learning related international conferences including IEEE ICTAI. Dr. Wan is also a reviewer for >70 prestigious journals including Nature Biotechnology, Nature Methods, Nature Communications, Nature Computational Science, Science Advances, Nucleic Acids Research, Advanced Science, Cancer Research, Genome Biology, and Genome Medicine. Dr. Wan has received a number of accolades including the Springer Nature Editor of Distinction Award in 2025 by Springer Nature, the New Investigator Award in 2024 by UNMC, the FIRST Award in 2023 by Nebraska EPSCoR, the Outstanding Young Alumni Award in 2022 by HK PolyU as well as the Global Peer Review Awards (top 1%) in “Cross-Field” and “Biology and Biochemistry” in 2019 by Clarivate. Dr. Wan is a member of AACR, ISCB and ACM and an IEEE Senior Member.

Algorithms & Analysis of Algorithms Artificial Intelligence Bioinformatics Cardiology Cell Biology Computational Biology Computational Science Computer Vision COVID-19 Data Mining & Machine Learning Data Science Databases Developmental Biology Diabetes & Endocrinology Epidemiology Evolutionary Studies Genetics Genomics Hematology Immunology Infectious Diseases Mathematical Biology Medical Genetics Metabolic Sciences Neural Networks Neuroscience Obesity Oncology Pathology Pediatrics Pharmacology Radiology & Medical Imaging Statistics Synthetic Biology Text Mining Translational Medicine Women's Health

Editorial Board Member

PeerJ Computer Science

Work details

Assistant Professor

University of Nebraska Medical Center
October 2022
Genetics, Cell Biology and Anatomy
Dr. Shibiao Wan is currently an Assistant Professor in the Department of Genetics, Cell Biology and Anatomy at University of Nebraska Medical Center (UNMC). He is also the Assistant Director for Bioinformatics and Systems Biology Core at UNMC. With more than 12 years of experience in machine learning, bioinformatics, and computational biology, Dr. Wan has published >40 articles in top-tiered journals like Genome Research, Nature Communications, Science Advances, Circulation Research, Briefings in Bioinformatics, and Bioinformatics. Dr. Wan is an editorial board member for a series of prestigious journals like BMC Bioinformatics, PeerJ Computer Science, BioMed Research International, and Computational and Mathematical Methods in Medicine, and a guest associate editor for multiple high-impact journals including Frontiers in Cell and Developmental Biology, Frontiers in Pharmacology, Biology, Frontiers in Genetics, and Genes. He is a TPC member for >20 machine learning related international conferences including IEEE ICTAI, IEEE IAICT, IEEE IoTaIS, and IEEE SOFTT. Dr. Wan is also a reviewer for >50 prestigious journals including IEEE TNNLS, Nucleic Acids Research, Genomic Medicine, and Briefings in Bioinformatics. He is a recipient of the global peer review awards (top 1%) in “Cross-Field” and “Biology and Biochemistry” in 2019 awarded by Clarivate. Dr. Wan is also an Outstanding Young Alumni Awardee in 2021-2022. Dr. Wan is an IEEE Senior Member and a member of AACR, ISCB and ACM.

Websites

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  • UNMC Official Page
  • Google Site
  • PubMed Search

PeerJ Contributions

  • Edited 56

Academic Editor on

September 4, 2025
Automated lung cancer diagnosis from chest X-ray images using convolutional neural networks
Aya Aboelghiet, Samaa M. Shohieb, Amira Rezk, Ahmed Abou Elfetouh, Ahmed Sharaf, Islam Abdelmaksoud
https://doi.org/10.7717/peerj-cs.3145
August 29, 2025
The DBCV index is more informative than DCSI, CDbw, and VIASCKDE indices for unsupervised clustering internal assessment of concave-shaped and density-based clusters
Davide Chicco, Giuseppe Sabino, Luca Oneto, Giuseppe Jurman
https://doi.org/10.7717/peerj-cs.3095
August 15, 2025
Optimizing transformer-based prediction of human microbe–disease associations through integrated loss strategies
Rong Zhu, Yong Wang, Junliang Shang, Ling-Yun Dai, Feng Li
https://doi.org/10.7717/peerj-cs.3098
August 14, 2025
Comparing variable neighbourhood search algorithms for the direct aperture optimisation in radiotherapy
Mauricio Moyano, Keiny Meza-Vasquez, Gonzalo Tello-Valenzuela, Nicolle Ojeda-Ortega, Carolina Lagos, Guillermo Cabrera-Guerrero
https://doi.org/10.7717/peerj-cs.3094
August 11, 2025
A novel deep learning approach for predicting stone-free rates post-ESWL on uncontrasted CT
Ozgur Efiloglu, Muhammed Yildirim, Kadir Yildirim, Harun Bingol, Mustafa Kaan Akalin, Meftun Culpan, Bilal Alatas, Asif Yildirim
https://doi.org/10.7717/peerj-cs.3111
July 25, 2025
Multi-task advanced convolutional neural network for robust lymphoblastic leukemia diagnosis, classification, and segmentation
Sercan Yalcin, Zuhal Cetin Yalcin, Muhammed Yildirim, Bilal Alatas
https://doi.org/10.7717/peerj-cs.3043
July 1, 2025
Comparison of EfficientNet CNN models for multi-label chest X-ray disease diagnosis
Murat Ucan, Buket Kaya, Osman Aygun, Mehmet Kaya, Reda Alhajj
https://doi.org/10.7717/peerj-cs.2968
June 20, 2025
MSKT: multimodal data fusion for improved nursing management in hemorrhagic stroke
Ting Zhou, Dandan Li, Jingfang Zuo, Aihua Gu, Li Zhao
https://doi.org/10.7717/peerj-cs.2969
June 18, 2025
Linear B-cell epitope prediction for SARS and COVID-19 vaccine design: Integrating balanced ensemble learning models and resampling strategies
Fatih Gurcan
https://doi.org/10.7717/peerj-cs.2970
May 27, 2025
RBI: a novel algorithm for regulatory-metabolic network model in designing the optimal mutant strain
Ridho Ananda, Kauthar Mohd Daud, Suhaila Zainudin
https://doi.org/10.7717/peerj-cs.2880
May 23, 2025
MAPE-ViT: multimodal scene understanding with novel wavelet-augmented Vision Transformer
Muhammad Waqas Ahmed, Touseef Sadiq, Hameedur Rahman, Sulaiman Abdullah Alateyah, Mohammed Alnusayri, Mohammed Alatiyyah, Dina Abdulaziz AlHammadi
https://doi.org/10.7717/peerj-cs.2796
March 26, 2025
A sequential recommendation method using contrastive learning and Wasserstein self-attention mechanism
Shengbin Liang, Jinfeng Ma, Qiuchen Zhao, Tingting Chen, Xixi Lu, Shuanglong Ren, Chenyang Zhao, Lei Fu, Huichao Ding
https://doi.org/10.7717/peerj-cs.2749
March 19, 2025
Protein-protein interaction prediction using enhanced features with spaced conjoint triad and amino acid pairwise distance
Yunus Emre Göktepe
https://doi.org/10.7717/peerj-cs.2748
December 24, 2024
Challenges issues and future recommendations of deep learning techniques for SARS-CoV-2 detection utilising X-ray and CT images: a comprehensive review
Md Shofiqul Islam, Fahmid Al Farid, F. M. Javed Mehedi Shamrat, Md Nahidul Islam, Mamunur Rashid, Bifta Sama Bari, Junaidi Abdullah, Muhammad Nazrul Islam, Md Akhtaruzzaman, Muhammad Nomani Kabir, Sarina Mansor, Hezerul Abdul Karim
https://doi.org/10.7717/peerj-cs.2517
November 11, 2024
Unsupervised learning analysis on the proteomes of Zika virus
Edgar E. Lara-Ramírez, Gildardo Rivera, Amanda Alejandra Oliva-Hernández, Virgilio Bocanegra-Garcia, Jesús Adrián López, Xianwu Guo
https://doi.org/10.7717/peerj-cs.2443
October 23, 2024
Computational approach for counting of SISH amplification signals for HER2 status assessment
Zaka Ur Rehman, Mohammad Faizal Ahmad Fauzi, Wan Siti Halimatul Munirah Wan Ahmad, Fazly Salleh Abas, Phaik Leng Cheah, Seow Fan Chiew, Lai-Meng Looi
https://doi.org/10.7717/peerj-cs.2373
September 26, 2024
Enhancing machine learning-based forecasting of chronic renal disease with explainable AI
Sanjana Singamsetty, Swetha Ghanta, Sujit Biswas, Ashok Pradhan
https://doi.org/10.7717/peerj-cs.2291
July 29, 2024
Enhancing infectious disease prediction model selection with multi-objective optimization: an empirical study
Deren Xu, Weng Howe Chan, Habibollah Haron
https://doi.org/10.7717/peerj-cs.2217
July 26, 2024
DeepCorr: a novel error correction method for 3GS long reads based on deep learning
Rongshu Wang, Jianhua Chen
https://doi.org/10.7717/peerj-cs.2160
July 23, 2024
piRNA-disease association prediction based on multi-channel graph variational autoencoder
Wei Sun, Chang Guo, Jing Wan, Han Ren
https://doi.org/10.7717/peerj-cs.2216
July 10, 2024
Towards reliable healthcare Imaging: conditional contrastive generative adversarial network for handling class imbalancing in MR Images
Lijuan Cui, Dengao Li, Xiaofeng Yang, Chao Liu
https://doi.org/10.7717/peerj-cs.2064
June 10, 2024
Three-layer heterogeneous network based on the integration of CircRNA information for MiRNA-disease association prediction
Jia Qu, Shuting Liu, Han Li, Jie Zhou, Zekang Bian, Zihao Song, Zhibin Jiang
https://doi.org/10.7717/peerj-cs.2070
May 31, 2024
Hybrid mRMR and multi-objective particle swarm feature selection methods and application to metabolomics of traditional Chinese medicine
Mengting Zhang, Jianqiang Du, Bin Nie, Jigen Luo, Ming Liu, Yang Yuan
https://doi.org/10.7717/peerj-cs.2073
May 24, 2024
Multi-view data visualisation via manifold learning
Theodoulos Rodosthenous, Vahid Shahrezaei, Marina Evangelou
https://doi.org/10.7717/peerj-cs.1993
May 17, 2024
CVG-Net: novel transfer learning based deep features for diagnosis of brain tumors using MRI scans
Shaha Al-Otaibi, Amjad Rehman, Ali Raza, Jaber Alyami, Tanzila Saba
https://doi.org/10.7717/peerj-cs.2008
May 17, 2024
Computer-aided colorectal cancer diagnosis: AI-driven image segmentation and classification
Çağatay Berke Erdaş
https://doi.org/10.7717/peerj-cs.2071
May 7, 2024
D-CyPre: a machine learning-based tool for accurate prediction of human CYP450 enzyme metabolic sites
Haolan Yang, Jie Liu, Kui Chen, Shiyu Cong, Shengnan Cai, Yueting Li, Zhixin Jia, Hao Wu, Tianyu Lou, Zuying Wei, Xiaoqin Yang, Hongbin Xiao
https://doi.org/10.7717/peerj-cs.2040
April 30, 2024
A methodological showcase: utilizing minimal clinical parameters for early-stage mortality risk assessment in COVID-19-positive patients
Jonathan K. Yan
https://doi.org/10.7717/peerj-cs.2017
April 29, 2024
A systematic review on diabetic retinopathy detection and classification based on deep learning techniques using fundus images
Dasari Bhulakshmi, Dharmendra Singh Rajput
https://doi.org/10.7717/peerj-cs.1947
April 19, 2024
Transfer learning based approach for lung and colon cancer detection using local binary pattern features and explainable artificial intelligence (AI) techniques
Shtwai Alsubai
https://doi.org/10.7717/peerj-cs.1996
March 12, 2024
Heart failure survival prediction using novel transfer learning based probabilistic features
Azam Mehmood Qadri, Muhammad Shadab Alam Hashmi, Ali Raza, Syed Ali Jafar Zaidi, Atiq ur Rehman
https://doi.org/10.7717/peerj-cs.1894
February 27, 2024
An efficient combined intelligent system for segmentation and classification of lung cancer computed tomography images
Maheswari Sivakumar, Sundar Chinnasamy, Thanabal MS
https://doi.org/10.7717/peerj-cs.1802
February 27, 2024
A novel approach to recognition of Alzheimer’s and Parkinson’s diseases: random subspace ensemble classifier based on deep hybrid features with a super-resolution image
Adi Alhudhaif
https://doi.org/10.7717/peerj-cs.1862
February 20, 2024
An efficient consolidation of word embedding and deep learning techniques for classifying anticancer peptides: FastText+BiLSTM
Onur Karakaya, Zeynep Hilal Kilimci
https://doi.org/10.7717/peerj-cs.1831
January 12, 2024
MCNMF-Unet: a mixture Conv-MLP network with multi-scale features fusion Unet for medical image segmentation
Lei Yuan, Jianhua Song, Yazhuo Fan
https://doi.org/10.7717/peerj-cs.1798
January 3, 2024
MetaSwin: a unified meta vision transformer model for medical image segmentation
Soyeon Lee, Minhyeok Lee
https://doi.org/10.7717/peerj-cs.1762
January 2, 2024
Brain tumor segmentation using U-Net in conjunction with EfficientNet
Shu-You Lin, Chun-Ling Lin
https://doi.org/10.7717/peerj-cs.1754
December 20, 2023
Binary semantic segmentation for detection of prostate adenocarcinoma using an ensemble with attention and residual U-Net architectures
Kasikrit Damkliang, Paramee Thongsuksai, Kanita Kayasut, Thakerng Wongsirichot, Chanwit Jitsuwan, Tarathep Boonpipat
https://doi.org/10.7717/peerj-cs.1767
December 11, 2023
A lightweight segmentation network for endoscopic surgical instruments based on edge refinement and efficient self-attention
Mengyu Zhou, Xiaoxiang Han, Zhoujin Liu, Yitong Chen, Liping Sun
https://doi.org/10.7717/peerj-cs.1746
December 5, 2023
A deep learning approach for the detection and counting of colon cancer cells (HT-29 cells) bunches and impurities
Inayatul Haq, Tehseen Mazhar, Rizwana Naz Asif, Yazeed Yasin Ghadi, Rabea Saleem, Fatma Mallek, Habib Hamam
https://doi.org/10.7717/peerj-cs.1651
December 4, 2023
An algorithmic multiple attribute decision-making method for heart problem analysis under neutrosophic hypersoft expert set with fuzzy parameterized degree-based setting
Muhammad Ihsan, Muhammad Saeed, Agaeb Mahal Alanzi, Hamiden El-Wahed Khalifa
https://doi.org/10.7717/peerj-cs.1607
November 27, 2023
STB: synthetic minority oversampling technique for tree-boosting models for imbalanced datasets of intrusion detection systems
Li-Hua Li, Ramli Ahmad, Radius Tanone, Alok Kumar Sharma
https://doi.org/10.7717/peerj-cs.1580
November 27, 2023
Optimized MobileNetV3: a deep learning-based Parkinson’s disease classification using fused images
Sukanya Pechetti, Battula Srinivasa Rao
https://doi.org/10.7717/peerj-cs.1702
November 22, 2023
Advancing retinoblastoma detection based on binary arithmetic optimization and integrated features
Nuha Alruwais, Marwa Obayya, Fuad Al-Mutiri, Mohammed Assiri, Amani A. Alneil, Abdullah Mohamed
https://doi.org/10.7717/peerj-cs.1681
November 15, 2023
GeneCompete: an integrative tool of a novel union algorithm with various ranking techniques for multiple gene expression data
Panisa Janyasupab, Apichat Suratanee, Kitiporn Plaimas
https://doi.org/10.7717/peerj-cs.1686
October 13, 2023
A new clustering method based on multipartite networks
Rodica-Ioana Lung
https://doi.org/10.7717/peerj-cs.1621
September 26, 2023
A spatially variant high-order variational model for Rician noise removal
Tran Dang Khoa Phan
https://doi.org/10.7717/peerj-cs.1579
September 22, 2023
A Kullback-Liebler divergence-based representation algorithm for malware detection
Faitouri A. Aboaoja, Anazida Zainal, Fuad A. Ghaleb, Norah Saleh Alghamdi, Faisal Saeed, Husayn Alhuwayji
https://doi.org/10.7717/peerj-cs.1492
August 28, 2023
Structural modeling and analysis of fuel cell: a graph-theoretic approach
Rajeev Kumar Saha, Raman Kumar, Nikhil Dev, Rajender Kumar, Raman Kumar, Raul M. Del Toro, Sofía Haber, José E. Naranjo
https://doi.org/10.7717/peerj-cs.1510
August 25, 2023
lab: an R package for generating analysis-ready data from laboratory records
Yi-Ju Tseng, Chun Ju Chen, Chia Wei Chang
https://doi.org/10.7717/peerj-cs.1528
August 24, 2023
Classification of melanonychia, Beau’s lines, and nail clubbing based on nail images and transfer learning techniques
Derya Yeliz Coşar Soğukkuyu, Oğuz Ata
https://doi.org/10.7717/peerj-cs.1533
August 21, 2023
A BERT-Span model for Chinese named entity recognition in rehabilitation medicine
Jinhong Zhong, Zhanxiang Xuan, Kang Wang, Zhou Cheng
https://doi.org/10.7717/peerj-cs.1535
August 18, 2023
Deep learning-based automatic action extraction from structured chemical synthesis procedures
Mantas Vaškevičius, Jurgita Kapočiūtė-Dzikienė, Arnas Vaškevičius, Liudas Šlepikas
https://doi.org/10.7717/peerj-cs.1511
August 18, 2023
Optimization of U-shaped pure transformer medical image segmentation network
Yongping Dan, Weishou Jin, Zhida Wang, Changhao Sun
https://doi.org/10.7717/peerj-cs.1515
August 8, 2023
Guiding the retraining of convolutional neural networks against adversarial inputs
Francisco Durán, Silverio Martínez-Fernández, Michael Felderer, Xavier Franch
https://doi.org/10.7717/peerj-cs.1454
July 13, 2023
MGACA-Net: a novel deep learning based multi-scale guided attention and context aggregation for localization of knee anterior cruciate ligament tears region in MRI images
Mazhar Javed Awan, Mohd Shafry Mohd Rahim, Naomie Salim, Haitham Nobanee, Ahsen Ali Asif, Muhammad Ozair Attiq
https://doi.org/10.7717/peerj-cs.1483