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PeerJ Author & Reviewer

1,245 Points

Contributions by role

Contributions by subject area

Mahmoud Ahmed

PeerJ Author & Reviewer

Summary

Bioinformatics Computational Biology Evidence Based Medicine Molecular Biology

Past or current institution affiliations

Cairo University

Gyeongsang National University

Work details

Graduate Student

Gyeongsang National University

Convergence Medical Science

Undergraduate Student

Cairo University

September 2007 - November 2014

Websites

PeerJ Contributions

October 20, 2023

Validating a re-implementation of an algorithm to integrate transcriptome and ChIP-seq data

Mahmoud Ahmed, Deok Ryong Kim

https://doi.org/10.7717/peerj.16318 PubMed 37876906

July 4, 2019

colocr: an R package for conducting co-localization analysis on fluorescence microscopy images

Mahmoud Ahmed, Trang Huyen Lai, Deok Ryong Kim

https://doi.org/10.7717/peerj.7255 PubMed 31309005

March 8, 2019

cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer

Mahmoud Ahmed, Deok Ryong Kim

https://doi.org/10.7717/peerj.6509 PubMed 30867986

March 16, 2018

pcr: an R package for quality assessment, analysis and testing of qPCR data

Mahmoud Ahmed, Deok Ryong Kim

https://doi.org/10.7717/peerj.4473 PubMed 29576953

March 22, 2019 - Version: 1

colocr: An R package for conducting co-localization analysis on fluorescence microscopy images

Mahmoud Ahmed, Trang Huyen Lai, Deok Ryong Kim

https://doi.org/10.7287/peerj.preprints.27613v1

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

December 13, 2021

Overexpression of SKA3 correlates with poor prognosis in female early breast cancer

Yue Zhong, Zhenjie Zhuang, Peiju Mo, Mandi Lin, Jiaqian Gong, Jiarong Huang, Haiyan Mo, Yuyun Lu, Mei Huang

https://doi.org/10.7717/peerj.12506 PubMed 34993016

September 3, 2020

Expression profile analysis to predict potential biomarkers for glaucoma: BMP1, DMD and GEM

Dao wei Zhang, Shenghai Zhang, Jihong Wu

https://doi.org/10.7717/peerj.9462 PubMed 32953253

July 30, 2020

Genome‐wide identification of CpG island methylator phenotype related gene signature as a novel prognostic biomarker of gastric cancer

Zhuo Zeng, Daxing Xie, Jianping Gong

https://doi.org/10.7717/peerj.9624 PubMed 32821544

July 21, 2020

An RNA-sequencing-based transcriptome for a significantly prognostic novel driver signature identification in bladder urothelial carcinoma

Danqi Liu, Boting Zhou, Rangru Liu

https://doi.org/10.7717/peerj.9422 PubMed 32742772

July 16, 2020

Diagnostic and prognostic values of upregulated SPC25 in patients with hepatocellular carcinoma

Xiaolin Yang, Hongzhi Sun, Ying Song, Li Yang, Haibo Liu

https://doi.org/10.7717/peerj.9535 PubMed 32742802

June 30, 2020

Microenvironment-related gene TNFSF13B predicts poor prognosis in kidney renal clear cell carcinoma

Mingzhe Jiang, Jiaxing Lin, Haotian Xing, Jun An, Jieping Yang, Biao Wang, Meng Yu, Yuyan Zhu

https://doi.org/10.7717/peerj.9453 PubMed 32655996

June 29, 2020

Integrative analysis of competitive endogenous RNA network reveals the regulatory role of non-coding RNAs in high-glucose-induced human retinal endothelial cells

Nan-Jue Cao, He-Nan Liu, Feng Dong, Wei Wang, Wei Sun, Gang Wang

https://doi.org/10.7717/peerj.9452 PubMed 32655995

June 26, 2020

Whole genome sequencing analysis identifies recurrent structural alterations in esophageal squamous cell carcinoma

Munmee Dutta, Hidewaki Nakagawa, Hiroaki Kato, Kazuhiro Maejima, Shota Sasagawa, Kaoru Nakano, Aya Sasaki-Oku, Akihiro Fujimoto, Raúl Nicolás Mateos, Ashwini Patil, Hiroko Tanaka, Satoru Miyano, Takushi Yasuda, Kenta Nakai, Masashi Fujita

https://doi.org/10.7717/peerj.9294 PubMed 32617189

June 17, 2020

Identification of SPRR3 as a novel diagnostic/prognostic biomarker for oral squamous cell carcinoma via RNA sequencing and bioinformatic analyses

Lu Yu, Zongcheng Yang, Yingjiao Liu, Fen Liu, Wenjing Shang, Wei Shao, Yue Wang, Man Xu, Ya-nan Wang, Yue Fu, Xin Xu

https://doi.org/10.7717/peerj.9393 PubMed 32596058

June 3, 2020

Identification of gene expression and DNA methylation of SERPINA5 and TIMP1 as novel prognostic markers in lower-grade gliomas

Wen-Jing Zeng, Yong-Long Yang, Zhi-Peng Wen, Peng Chen, Xiao-Ping Chen, Zhi-Cheng Gong

https://doi.org/10.7717/peerj.9262 PubMed 32547876

June 1, 2020

Prognostic significance of PI3K/AKT/ mTOR signaling pathway members in clear cell renal cell carcinoma

Demin Fan, Qiang Liu, Fei Wu, Na Liu, Hongyi Qu, Yijiao Yuan, Yong Li, Huayu Gao, Juntao Ge, Yue Xu, Hao Wang, Qingyong Liu, Zuohui Zhao

https://doi.org/10.7717/peerj.9261 PubMed 32547875

May 21, 2020

Development and validation of a prognostic nomogram to predict overall survival and cancer-specific survival for patients with anaplastic thyroid carcinoma

Weiwei Gui, Weifen Zhu, Weina Lu, Chengxin Shang, Fenping Zheng, Xihua Lin, Hong Li

https://doi.org/10.7717/peerj.9173 PubMed 32509460

May 20, 2020

High expression of stromal signatures correlated with macrophage infiltration, angiogenesis and poor prognosis in glioma microenvironment

Yixin Tian, Yiquan Ke, Yanxia Ma

https://doi.org/10.7717/peerj.9038 PubMed 32509446

April 29, 2020

Aberrant expression of two miRNAs promotes proliferation, hepatitis B virus amplification, migration and invasion of hepatocellular carcinoma cells: evidence from bioinformatic analysis and experimental validation

Yanming Liu, Yue Cao, Wencan Cai, Liangyin Wu, Pingsen Zhao, Xin-guang Liu

https://doi.org/10.7717/peerj.9100 PubMed 32377460

April 28, 2020

Knockdown of CDCA8 inhibits the proliferation and enhances the apoptosis of bladder cancer cells

Xin Gao, Xiaohong Wen, Haowei He, Linlin Zheng, Yibo Yang, Jinlian Yang, Haifang Liu, Xiguo Zhou, Changshun Yang, Yinyi Chen, Mei Chen, Shufang Zhang

https://doi.org/10.7717/peerj.9078 PubMed 32377458