Ruth E Timme

PeerJ Author & Reviewer

Summary

Evolutionary Studies Genomics Infectious Diseases Microbiology

Identities

@doctorruth

PeerJ Contributions

January 26, 2023

Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples

Tunc Kayikcioglu, Jasmine Amirzadegan, Hugh Rand, Bereket Tesfaldet, Ruth E. Timme, James B. Pettengill

https://doi.org/10.7717/peerj.14596 PubMed 36721781

October 6, 2017

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

Ruth E. Timme, Hugh Rand, Martin Shumway, Eija K. Trees, Mustafa Simmons, Richa Agarwala, Steven Davis, Glenn E. Tillman, Stephanie Defibaugh-Chavez, Heather A. Carleton, William A. Klimke, Lee S. Katz

https://doi.org/10.7717/peerj.3893 PubMed 29372115

April 17, 2014

The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica

James B. Pettengill, Ruth E. Timme, Rodolphe Barrangou, Magaly Toro, Marc W. Allard, Errol Strain, Steven M. Musser, Eric W. Brown

https://doi.org/10.7717/peerj.340 PubMed 24765574

July 25, 2017 - Version: 1

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

Ruth E Timme, Hugh Rand, Martin Shumway, Eija K Trees, Mustafa Simmons, Richa Agarwala, Steven Davis, Glen Tillman, Stephanie Defibaugh-Chavez, Heather A Carleton, William A Klimke, Lee S Katz

https://doi.org/10.7287/peerj.preprints.3107v1

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

September 14, 2016

Whole genome sequencing of Streptococcus pneumoniae: development, evaluation and verification of targets for serogroup and serotype prediction using an automated pipeline

Georgia Kapatai, Carmen L. Sheppard, Ali Al-Shahib, David J. Litt, Anthony P. Underwood, Timothy G. Harrison, Norman K. Fry

https://doi.org/10.7717/peerj.2477 PubMed 27672516