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Bronze Contributor

Rohit Upadhyay

PeerJ Editor & Reviewer

Summary

Dr. Rohit Upadhyay is a Research Scientist in the School of Medicine at Tulane University.

He has skills and expertise in the following areas; Cancer Genetics, Cell and Molecular biology, Kidney Injury, Pharmacology, and Molecular mechanisms of complex diseases.

Bioinformatics Cell Biology Computational Biology Epidemiology Genetics Molecular Biology Pharmacology

Editorial Board Member

PeerJ - the Journal of Life & Environmental Sciences

Past or current institution affiliations

Tulane University

Work details

Research Scientist

Tulane University

School of Medicine

Websites

PeerJ Contributions

Edited 40

Academic Editor on

August 20, 2025

Genome-wide discovery of circulating cell-free DNA methylation signatures for the differential diagnosis of triple-negative breast cancer

Lijing Gao, Yanbing Li, Chao Qu, Yan Dong, Qingzhen Fu, Haibo Zhou, Ning Zhao, Xianyu Zhang, Da Pang, Yashuang Zhao

https://doi.org/10.7717/peerj.19888 PubMed 40860669

August 19, 2025

Effect of acid-suppressive drugs on endoscopic transmural drainage of peripancreatic fluid collections—a randomized controlled trial

Yaoting Li, Tingting Yu, Senlin Hou, Wei Zhang, Haiming Du, Yankun Hou, Jiao Tian, Lichao Zhang

https://doi.org/10.7717/peerj.19872 PubMed 40860654

August 6, 2025

High cyclic GMP-AMP synthase and stimulator of interferon genes in cholangiocarcinoma suggest their potential as targets for treatment

Han Ni Zin Myint, Paksiree Saranaruk, Natnicha Paungpan, Sakda Waraasawapati, Chawalit Pairojkul, Saowaluk Saisomboon, Nutsara Settha, Jatuporn Pattanachot, Seiji Okada, Wunchana Seubwai, Amnat Kitkhuandee, Kanlayanee Sawanyawisuth, Kulthida Vaeteewoottacharn

https://doi.org/10.7717/peerj.19800 PubMed 40786100

July 31, 2025

Optimizing carbon nanoparticle staining for sentinel lymph nodes in rabbit lower limb models: concentration and time dependence

Narbol Kylyshbek, Heng Wang, Shuning Feng, Yuxin Zhang, Dong Dong, Wangjaleoseop Han, Ayidana Ayoujiang, Liang Chen, Tianyi Liu

https://doi.org/10.7717/peerj.19799 PubMed 40755796

July 16, 2025

Analysis of epidemic trend of respiratory pathogens in children after long-term pathogen isolation

Ping Chen, Yahong Li, Shiwei Li, Xin Hua, Yu Liu

https://doi.org/10.7717/peerj.19710 PubMed 40687755

July 14, 2025

MAPK/ERK signaling pathway in rheumatoid arthritis: mechanisms and therapeutic potential

Jun Xie, Sijuan Sun, Qingzhou Li, Yuhui Chen, Lijun Huang, Dong Wang, Yumei Wang

https://doi.org/10.7717/peerj.19708 PubMed 40677749

July 10, 2025

Survival benefit from adjuvant chemoradiotherapy in local advanced gastric cancer without accurate D2 confirmation: a real-world retrospective study (TJ-ARK01)

Xiao-Xiao Luo, Ben Zhao, Li Sun, Yu-Hong Dai, Hong Qiu, Xiang-Lin Yuan

https://doi.org/10.7717/peerj.19363 PubMed 40656957

July 3, 2025

Serum miR-15a-5p may predict recurrence of atrial fibrillation after catheter ablation: a single center retrospective study

Zhong-Bao Ruan, Qian Peng, Xiang-Jiang Sun, Fei Wang, Li Zhu

https://doi.org/10.7717/peerj.19618 PubMed 40620773

June 26, 2025

Genome-wide identification and characterization of the NF-Y proteins in Zanthoxylum armatum

Xianzhe Zheng, Yanling Duan, Huifang Zheng, Hao Tang, Liumeng Zheng, Xiaobo Yu

https://doi.org/10.7717/peerj.19142 PubMed 40585333

June 11, 2025

The value of nanocarbon contrast methylene blue based on dye-based tracer technology in sentinel lymph node biopsy for breast cancer: a systematic review and meta-analysis

Luhua Xia, Zuowei Zou, Le Chong, Xinhua Wang, Zhanfei Dong, Yanping Zhao

https://doi.org/10.7717/peerj.19546 PubMed 40520631

June 6, 2025

Efficacy of trimetazidine for myocardial ischemia-reperfusion injury in rat models: a systematic review and meta-analysis

Xiaobin Zhang, Zhanhui Duan, Yanpu Yu, Chunjing Li, Mingyao Hao, Yuning Ma, Yuxia Ma, Dongqing Du

https://doi.org/10.7717/peerj.19515 PubMed 40492206

June 3, 2025

Proteomic profiling of the human amniotic stem cell-highly abundant secreted proteins

Dan He, Yuqiang Cheng, Hongkai Lv, Anqi Geng, Jie Zheng, Lin Dang, Pengfei Li

https://doi.org/10.7717/peerj.19449 PubMed 40487068

May 28, 2025

Alleviation of dextran sulfate sodium (DSS)-induced colitis in mice through the antioxidative effects of muscone via the MyD88/p38 MAPK signalling pathway

Gang Yao, Jian Zhang, Lingyan Zhang, Hai Zhao, Shuguang Wu, Hongmei Yang, Jiangwei Yu

https://doi.org/10.7717/peerj.19397 PubMed 40452925

May 26, 2025

BNC1 inhibits the development and progression of gastric cancer by regulating the CCL20/JAK-STAT axis

Lixin Liu, Li Xiong, Hong Peng, Qin Deng, Kang Liu, Shusen Xia

https://doi.org/10.7717/peerj.19477 PubMed 40444282

May 13, 2025

Preventive behaviors of COVID-19 during the COVID-19 pandemic among community-dwelling older adults in Thailand

Kanchana Piboon, Jarinthip Chomchaipon, Dhammawat Ouppawongsapat, Wanlop Jaidee, Patchana Hengboriboonpong Jaidee, Paiboon Pongsaengpan, Wiriya Mahikul

https://doi.org/10.7717/peerj.19412 PubMed 40386234

May 13, 2025

Has_circRNA_0122683 (circ-PRKCI) relieves ferroptosis of HPAEpiCs in sepsis-induced acute lung injury by sponging miR-382-5p

Limei Yan, Xiajun Lu, Ning Wang, Peng Jia

https://doi.org/10.7717/peerj.19404 PubMed 40386233

May 7, 2025

Retrospective study on the correlation between CXCL13, immune infiltration, and tertiary lymphoid structures in cutaneous squamous cell carcinoma

Yulu Chen, Yuhao Wu, Zijun Zhao, Long Wen, Mingshun Wu, Dekun Song, Qingyu Zeng, Yeqiang Liu, Guorong Yan, Guolong Zhang

https://doi.org/10.7717/peerj.19398 PubMed 40352278

May 6, 2025

Polymicrobial detection and salivary metabolomics of children with early childhood caries

Ting Pan, YuJia Ren, JingYi Li, Ying Liao, XiangHui Xing

https://doi.org/10.7717/peerj.19399 PubMed 40352277

April 22, 2025

Long non-coding RNA CYTOR promotes the progression of melanoma via the miR-485-5p/GPI axis

Haitao Lu, Yunhua Zhao, Yanli Zhang, Shaomin Shi, Huanrong Hu, Xuefei Li, Yandong Niu, Haihua Qi, Shang Ji, Xinsuo Duan, Yaling Liu

https://doi.org/10.7717/peerj.19284 PubMed 40292095

April 17, 2025

Comprehensive evaluation of methods for identifying tissues or cell types of origin of the plasma cell-free transcriptome

Tingyu Yang, Yulong Qin, Shuo Yan, Sijia Guo, Jinghua Sun, Jiayi Huang, Jiayi Li, Qing Zhou, Xin Jin, Wen-Jing Wang

https://doi.org/10.7717/peerj.19241 PubMed 40256737

April 14, 2025

Prognostic value and immunotherapy analysis of immune cell-related genes in laryngeal cancer

Sen Zhang, Jianrui Pan, Huina Guo, Xiaoya Guan, Chenxu Yan, Lingling Ji, Xiansha Wu, Hui Huangfu

https://doi.org/10.7717/peerj.19239 PubMed 40247837

April 4, 2025

Advances in solubilization and stabilization techniques for structural and functional studies of membrane proteins

Zhuanghan Zhou, Zheng Chen, Yiran Li, Xingyue Mao, Junjie Chen, Xuan Zhou, Bo Zhang

https://doi.org/10.7717/peerj.19211 PubMed 40196297

March 31, 2025

A novel simple immunoassay for quantification of blood anti-NMDAR1 autoantibodies

Melonie Vaughn, Susan Powell, Victoria Risbrough, Xianjin Zhou

https://doi.org/10.7717/peerj.19212 PubMed 40183041

March 24, 2025

Isolation and in silico analysis of a new subclass of parasporin 4 from Bacillus thuringiensis coreanensis

Thais N. F. Santos, Raquel O. Moreira, Jardel D. B. Rodrigues, Luis A. C. Rojas, Jackson A. M. Souza, Janete A. Desidério

https://doi.org/10.7717/peerj.19061 PubMed 40151459

March 18, 2025

Which patients are more likely to experience compensatory hyperhidrosis after endoscopic thoracic sympathectomy: a meta-analysis and systematic review

Zhi-yi Lin, Min Lin

https://doi.org/10.7717/peerj.19097 PubMed 40124609

March 14, 2025

The association between non-high-density lipoprotein cholesterol to high-density lipoprotein cholesterol ratio (NHHR) and risk of prostate cancer: a retrospective study

Ke Bu, Jinru Wang, Xiaojie Zheng, Kaige Zhang, Duolao Wang, Hengqing An, Ning Tao

https://doi.org/10.7717/peerj.19065 PubMed 40098813

February 25, 2025

Prediction of clinical deterioration within one year in chronic obstructive pulmonary disease using the systemic coagulation-inflammation index: a retrospective study employing multiple machine learning method

Ling Hou, Ming Min, Rui Hou, Wei Tan, Minghua Zhang, Qianfei Liu

https://doi.org/10.7717/peerj.18989 PubMed 40028201

February 25, 2025

Efficacy and safety of low-molecular-weight-heparin plus citrate in nephrotic syndrome during continuous kidney replacement therapy: retrospective study

Di Wang, Mengqin Yang, Siyuan Li, Can Tang, Jun Ai, Diankun Liu

https://doi.org/10.7717/peerj.18919 PubMed 40028212

February 21, 2025

Study on SARS-CoV-2 infection in middle-aged and elderly population infected with hepatitis virus: a cohort study in a rural area of northeast China

Yuchen Pan, Zhifang Jia, Xinyi Yu, Haiyong Lv, Yangyu Zhang, Yanhua Wu, Jing Jiang

https://doi.org/10.7717/peerj.19021 PubMed 39995984

February 21, 2025

Potential role of ghrelin in neuroprotection and cognitive function: implications for diabetic cognitive impairment

Yuhan Zhang, Ruihua Zhang, Xin Wang, Leilei Shi, Hongzhe Zhu, Jiping Liu

https://doi.org/10.7717/peerj.18898 PubMed 39995985

February 20, 2025

Unravelling approaches to study macrophages: from classical to novel biophysical methodologies

Polina Vishnyakova, Andrey Elchaninov, Timur Fatkhudinov, Dmitry Kolesov

https://doi.org/10.7717/peerj.19039 PubMed 39989743

February 13, 2025

Modified Early Warning Score (MEWS) combined with biomarkers in predicting 7-day mortality in traumatic brain injury patients in the emergency department: a retrospective cohort study

Shouzhen Zhu, Yongqiang Yang, Boling Long, Li Tong, Jinhua Shen, Xueqing Zhang

https://doi.org/10.7717/peerj.18936 PubMed 39959820

February 13, 2025

Advances and insights for DKK3 in non-cancerous diseases: a systematic review

Yao Sun, Zengli Xiao, Shuguang Yang, Chenxiao Hao, Huiying Zhao, Youzhong An

https://doi.org/10.7717/peerj.18935 PubMed 39959827

December 16, 2024

Charting the global footprint of borderline oxacillin-resistant Staphylococcus aureus (BORSA): the first systematic review and meta-analysis

Engku Nur Syafirah Engku Abd Rahman, Ahmad Adebayo Irekeola, Dina Yamin, Abdirahman Hussein Elmi, Yean Yean Chan

https://doi.org/10.7717/peerj.18604 PubMed 39703916

December 13, 2024

Prognostic value of serum Mrp 8/14 in sepsis-induced acute respiratory distress syndrome patients: a retrospective cohort study

Caizhi Sun, Yongpeng Xie, Chenchen Zhu, Lei Guo, Bowen Xu, Haidong Qin, Xiaomin Li

https://doi.org/10.7717/peerj.18718 PubMed 39686985

November 26, 2024

Phase angle as a predictor of mortality in elderly patients with multimorbidity: a matched case-control study

Yao Wang, Tingting Liu, Tianru Zheng, Yun Zhang, Li Li, Maolong Gao

https://doi.org/10.7717/peerj.18592 PubMed 39619185

November 22, 2024

Serum neuron-specific enolase (NSE) is associated with the overall survival of colorectal cancer: a retrospective study

Junwei Peng, Jie Ma, Jian Lu, Hailiang Ran, Zhongqin Yuan, Hai Zhou, Yunchao Huang, Yuanyuan Xiao

https://doi.org/10.7717/peerj.18617 PubMed 39588000

November 18, 2024

Risk factors for postoperative hypokalemia in patients undergoing endoscopic pituitary adenoma resection: a retrospective cohort study

Maoxiang Li, Changhong Mo, Sifan Yan, Ruijing Zhao, Weijian Luo, Lu Yang, Hao Wang, Jiliang Hu

https://doi.org/10.7717/peerj.18536 PubMed 39575168

September 16, 2024

MME and PTPRC: key renal biomarkers in lupus nephritis

Min Wen, Marady Hun, Mingyi Zhao, Qingnan He

https://doi.org/10.7717/peerj.18070 PubMed 39301055

July 17, 2024

Secretomic changes of amyloid beta peptides on Alzheimer’s disease related proteins in differentiated human SH-SY5Y neuroblastoma cells

Sittiruk Roytrakul, Janthima Jaresitthikunchai, Narumon Phaonakrop, Sawanya Charoenlappanit, Siriwan Thaisakun, Nitithorn Kumsri, Teerakul Arpornsuwan

https://doi.org/10.7717/peerj.17732 PubMed 39035166