Analysis of the role and mechanism of EGCG in septic cardiomyopathy based on network pharmacology

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Bioinformatics and Genomics

Main article text

 

Introduction

Methods

Screening of molecular targets of EGCG against septic cardiomyopathy

Construction of PPI network and screening of key genes

GO and KEGG analysis of potential targets of EGCG Anti-SC

Docking analysis of targets and EGCG

Verify the role of EGCG and the level of hub genes

Materials and animal treatment

Echocardiography

Histological examination

Quantitative reverse transcription-PCR analysis

Statistical analysis

Result

Molecular formula and potential EGCG anti-SC molecular targets

Acquisition results of hub genes for EGCG anti-SC and PPI network construction

GO and KEGG pathway enrichment analysis

Molecular docking results

Effect of EGCG on functional and morphological changes of echocardiography induced by LPS

Experimental verification of target genes expression in LPS-induced mouse model

Discussion

Conclusion and Limitation

Supplemental Information

ARRIVE Checklist

DOI: 10.7717/peerj.12994/supp-1

The PPI network diagram and the results of GO and KEGG enrichment analysis

DOI: 10.7717/peerj.12994/supp-2

Additional Information and Declarations

Competing Interests

The authors declare there are no competing interests.

Author Contributions

Ji Wu and Zhenhua Wang conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, and approved the final draft.

Shanling Xu performed the experiments, analyzed the data, prepared figures and/or tables, and approved the final draft.

Yang Fu performed the experiments, prepared figures and/or tables, and approved the final draft.

Yi Gao performed the experiments, authored or reviewed drafts of the paper, and approved the final draft.

Zuxiang Wu, Yougen Yuan analyzed the data, prepared figures and/or tables, and approved the final draft.

Yun Yu analyzed the data, authored or reviewed drafts of the paper, analysis tools, and approved the final draft.

Lin Zhou conceived and designed the experiments, prepared figures and/or tables, authored or reviewed drafts of the paper, and approved the final draft.

Ping Li conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, and approved the final draft.

Animal Ethics

The following information was supplied relating to ethical approvals (i.e., approving body and any reference numbers):

Committee of the Second Affiliated Hospital of Nanchang University(SYXK()2015-0001)

Data Availability

The following information was supplied regarding data availability:

The raw measurements are available in the Supplementary Files.

Funding

This work was supported by the National Natural Science Foundation of China (NO. 81860058, 81960088), and special funds for guiding local scientific and technological development by the central government of China (NO. S2019CXSFG0016). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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