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Rana Muhammad Atif
PeerJ Author & Reviewer
1,440 Points

Contributions by role

Author 135
Reviewer 105
Editor 1,200

Contributions by subject area

Agricultural Science
Genomics
Plant Science
Bioinformatics
Biotechnology
Molecular Biology
Natural Resource Management
Ecology
Mycology
Microbiology

Rana Muhammad Atif

PeerJ Author & Reviewer

Summary

My research work broadly concentrates on the genetic improvement of grain legumes against abiotic stresses using genetic and genomic approaches. More specifically, my lab characterizes cool-season pulse legumes germplasm especially chickpea and lentil for the identification of best performing elite genotypes. For this purpose, we are employing genetics, genomics and conventional breeding approaches. At genome level, we are involved in identification and characterization of key transcriptional factor family members from the sequenced genomes of grain legumes implicated in the abiotic stress responses. We also employ comparative phylogenetic approaches to get insights in the evolution of these gene families in crop plants. Using the genotyping-by-sequencing approach, we are also identifying the key genomic regions controlling the important agronomic and physiological traits under abiotic stresses using genome-wide association studies in Chickpea. We are trying to identify the key alleles and their gene expression under drought-stress conditions in Chickpea using RNA-seq based transcriptional profiling.

Agricultural Science Bioinformatics Biotechnology Genomics Molecular Biology Plant Science

Past or current institution affiliations

UC Berkeley
UC Davis
University of Agriculture Faisalabad

Work details

Visiting Asst. Prof.

University of California, Davis
September 2023
Plant Pathology

Associate Professor

University of Agriculture Faisalabad
November 2022
Plant Breeding and Genetics
I have been involved in teaching graduate and post graduate courses, and supervising research work of M.Phil. and Ph.D. students.

Assistant Professor

University of California, Berkeley
August 2013 - November 2022
Plant Breeding and Genetics

Websites

  • Google Scholar
  • ResearcherID
  • ORCID
  • SCOPUS ID

PeerJ Contributions

  • Articles 1
  • Edited 11
  • Reviewed 1
March 10, 2022
Dissection of genetic architecture for tiller angle in rice (Oryza sativa. L) by multiple genome-wide association analyses
Muhammad Abdul Rehman Rashid, Rana Muhammad Atif, Yan Zhao, Farrukh Azeem, Hafiz Ghulam Muhu-Din Ahmed, Yinghua Pan, Danting Li, Yong Zhao, Zhanying Zhang, Hongliang Zhang, Jinjie Li, Zichao Li
https://doi.org/10.7717/peerj.12674

Academic Editor on

May 19, 2023
A comparative analysis of small RNA sequencing data in tubers of purple potato and its red mutant reveals small RNA regulation in anthocyanin biosynthesis
Fang Liu, Peng Zhao, Guangxia Chen, Yongqiang Wang, Yuanjun Yang
https://doi.org/10.7717/peerj.15349 PubMed 37223121
October 3, 2022
Uncovering the mechanism of anthocyanin accumulation in a purple-leaved variety of foxtail millet (Setaria italica) by transcriptome analysis
Yaofei Zhao, Yaqiong Li, Xiaoxi Zhen, Jinli Zhang, Qianxiang Zhang, Zhaowen Liu, Shupei Hou, Yuanhuai Han, Bin Zhang
https://doi.org/10.7717/peerj.14099 PubMed 36213506
March 10, 2022
Genotypic variation in root architectural traits under contrasting phosphorus levels in Mediterranean and Indian origin lentil genotypes
Muraleedhar Aski, Reena Mehra, Gyan Prakash Mishra, Dharmendra Singh, Prachi Yadav, Neha Rai, Venkata Ravi Prakash Reddy, Arun Kumar MB, Renu Pandey, Madan Pal Singh, Gayacharan, Ruchi Bansal, Kuldeep Tripathi, Sripada M. Udupa, Shiv Kumar, Ashutosh Sarker, Harsh Kumar Dikshit
https://doi.org/10.7717/peerj.12766 PubMed 35291490
March 8, 2022
A bZIP transcription factor, PqbZIP1, is involved in the plant defense response of American ginseng
Shanshan Yang, Xiaoxiao Zhang, Ximei Zhang, Yanmeng Bi, Weiwei Gao
https://doi.org/10.7717/peerj.12939 PubMed 35282281
February 22, 2022
Antifungal activity of an artificial peptide aptamer SNP-D4 against Fusarium oxysporum
Junjun Huang, Dan Wang, Hong Li, Yanqiong Tang, Xiang Ma, Hongqian Tang, Min Lin, Zhu Liu
https://doi.org/10.7717/peerj.12756 PubMed 35223198
February 8, 2022
Genome-wide identification and functional characterization of CDPK gene family reveal their involvement in response to drought stress in Gossypium barbadense
Guangzhen Shi, Xinxia Zhu
https://doi.org/10.7717/peerj.12883 PubMed 35186477
January 20, 2022
Knockdown of GmD53a confers strigolactones mediated rhizobia interaction and promotes nodulation in soybean
Naveed Rehman, Fahim Ullah Khan, Muhammad Imran, Shahid Ali Rajput, Yiming Li, Ihteram Ullah, Rana waseem Akhtar, Muhammad Imran, Arwa Abdulkreem AL-Huqail, Ahmad El Askary, Amany Salah Khalifa, Muhammad Tehseen Azhar
https://doi.org/10.7717/peerj.12815 PubMed 35116200
December 15, 2021
Genome-wide identification, evolution, and expression analysis of the NPR1-like gene family in pears
Yarui Wei, Shuliang Zhao, Na Liu, Yuxing Zhang
https://doi.org/10.7717/peerj.12617 PubMed 35003927
December 7, 2021
Leaf spot of Hosta ventricosa caused by Fusarium oxysporum in China
Chunxia Wang, Hulei Zhang, Shenhai Wang, Shengfeng Mao
https://doi.org/10.7717/peerj.12581 PubMed 34966590
December 2, 2021
Boll characteristics and yield of cotton in relation to the canopy microclimate under varying plant densities in an arid area
Na Zhang, Liwen Tian, Lu Feng, Wenxiu Xu, Yabing Li, Fangfang Xing, Zhengyi Fan, Shiwu Xiong, Jianghua Tang, Chunmei Li, Ling Li, Yunzhen Ma, Fang Wang
https://doi.org/10.7717/peerj.12111 PubMed 34917420
October 25, 2021
Comparative transcriptomic analysis provides insight into carpel petaloidy in lotus (Nelumbo nucifera)
Zhongyuan Lin, Dingding Cao, Rebecca Njeri Damaris, Pingfang Yang
https://doi.org/10.7717/peerj.12322 PubMed 34754621

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

December 2, 2022
Transcriptome-wide identification of WRKY transcription factors and their expression profiles under different stress in Cynanchum thesioides
Xiaoyao Chang, Zhongren Yang, Xiaoyan Zhang, Fenglan Zhang, Xiumei Huang, Xu Han
https://doi.org/10.7717/peerj.14436 PubMed 36518281