Cryptic diversity in the subgenus Oxyphortica (Diptera, Drosophilidae, Stegana)

View article
RT @PeerJLife: Wang et al. examine the cryptic diversity in the subgenus #Oxyphortica  Read the full article https://t.co/0qzHkOnmF6 #Biod…
Wang et al. examine the cryptic diversity in the subgenus #Oxyphortica  Read the full article https://t.co/0qzHkOnmF6 #Biodiversity #Entomology #MolecularBiology https://t.co/rUzWDu1T1S
Biodiversity and Conservation

Main article text

 

Introduction

Materials & methods

Sampling and morphological evaluations

PCR amplification and sequencing

Phylogenetic analyses

Species delimitation

Results

Taxonomy

Discussion

Supplemental Information

Phylogenetic tree constructed from the maximum likelihood analysis based on the concatenated dataset.

Numbers around the nodes indicate the ultrafast bootstrap (UFBP) values. Abbreviations: L., genus Leucophenga; Pa., genus Parastegana; Ps., genus Pseudostegana; S., genus Stegana; s.s., sensu stricto; St., subgenus Steganina; O., subgenus Oxyphortica; Or., subgenus Orthostegana.

DOI: 10.7717/peerj.12347/supp-1

Phylogenetic tree constructed from the Bayesian analysis based on the COI sequences.

Numbers around the nodes indicate the Bayesian posterior probability (PP) values. Abbreviations: L., genus Leucophenga; Pa., genus Parastegana; Ps., genus Pseudostegana; S., genus Stegana; s.s., sensu stricto; St., subgenus Steganina; O., subgenus Oxyphortica; Or., subgenus Orthostegana.

DOI: 10.7717/peerj.12347/supp-2

Phylogenetic tree constructed from the maximum likelihood analysis based on the COI sequences.

Numbers around the nodes indicate the ultrafast bootstrap (UFBP) values. Abbreviations: L., genus Leucophenga; Pa., genus Parastegana; Ps., genus Pseudostegana; S., genus Stegana; s.s., sensu stricto; St., subgenus Steganina; O., subgenus Oxyphortica; Or., subgenus Orthostegana.

DOI: 10.7717/peerj.12347/supp-3

Phylogenetic tree constructed from the Bayesian analysis based on the ND2 sequences.

Numbers around the nodes indicate the Bayesian posterior probability (PP) values. Abbreviations: L., genus Leucophenga; Pa., genus Parastegana; Ps., genus Pseudostegana; S., genus Stegana; s.s., sensu stricto; St., subgenus Steganina; O., subgenus Oxyphortica; Or., subgenus Orthostegana.

DOI: 10.7717/peerj.12347/supp-4

Phylogenetic tree constructed from the maximum likelihood analysis based on the ND2 sequences.

Numbers around the nodes indicate the ultrafast bootstrap (UFBP) values. Abbreviations: L., genus Leucophenga; Pa., genus Parastegana; Ps., genus Pseudostegana; S., genus Stegana; s.s., sensu stricto; St., subgenus Steganina; O., subgenus Oxyphortica; Or., subgenus Orthostegana.

DOI: 10.7717/peerj.12347/supp-5

The Bayesian Phylogenetics and Phylogeography (BP&P) analysis result based on the COI and ND2 data set.

DOI: 10.7717/peerj.12347/supp-6

Summary of genetic distances of COI gene.

DOI: 10.7717/peerj.12347/supp-7

Summary of genetic distances of ND2 gene.

DOI: 10.7717/peerj.12347/supp-8

Additional Information and Declarations

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Ya-Lian Wang analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, and approved the final draft.

Nan-Nan Wang performed the experiments, prepared figures.

Yuan Zhang performed the experiments, prepared figures.

Shun-Chern Tsaur approved the final draft.

Hong-Wei Chen conceived and designed the experiments, authored or reviewed drafts of the paper, and approved the final draft.

Data Availability

The following information was supplied regarding data availability:

The raw data is available at NCBI GenBank: MH235736 to MH235747, MH235749 to MH235755, MH235759 to MH235791, MH372081 to MH372086, MH372103 to MH372184, MH372195 to MH372246, MH373118, MH373119, MH373186, MH373187, MH373224

Specimen information and the accession numbers are listed in Table 1.

New Species Registration

The following information was supplied regarding the registration of a newly described species:

Publication LSID: urn:lsid:zoobank.org:pub:1D19FB6F-DBF2-4982-9C9A-D8FBFC1F3F1E

Species name: Stegana (Oxyphortica) amphigya Wang & Chen sp. nov.

urn:lsid:zoobank.org:act:E6BE14A6-5E2B-4DAD-87D6-2819DFAE5202

Species name: Stegana (Oxyphortica) armillata Wang & Chen sp. nov.

urn:lsid:zoobank.org:act:699B1E1E-35F2-4772-A36E-6BE7277C4575

Species name: Stegana (Oxyphortica) ashima Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:5F7EECB0-12D6-419F-90BB-697D9BF2C455

Species name: Stegana (Oxyphortica) bawo Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:7EF83FD7-92D3-4831-BBA6-3ACDF305E9D0

Species name: Stegana (Oxyphortica) crypta Wang & Chen sp. nov.

urn:lsid:zoobank.org:act:2CF4A9E7-38C9-47ED-97F4-7CFB849612C2

Species name: Stegana (Oxyphortica) gelea Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:91334019-DC7F-4922-9D95-25B8C7CD64C2

Species name: Stegana (Oxyphortica) hengduanmontana Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:C2BA7D62-428B-4FA7-9507-24AC574813E8

Species name: Stegana (Oxyphortica) jinmingi Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:D744D8E0-9475-474F-971F-8EDE39E9C756

Species name: Stegana (Oxyphortica) mengbalanaxi Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:35238DA6-11C8-49AC-8BA2-B4511D549F65

Species name: Stegana (Oxyphortica) mouig Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:7991CFC0-2FCC-426C-AEAE-5CA088F2EB46

Species name: Stegana (Oxyphortica) setipes Wang & Chen sp. nov.

urn:lsid:zoobank.org:act:57CE9B92-7CF3-4CD6-89A0-1E1C38CC0E9D

Species name: Stegana (Oxyphortica) shangrila Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:3A1E56C9-47B2-481E-86D7-59827175DE19

Species name: Stegana (Oxyphortica) tsauri Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:420D7B97-DDCC-4C46-B937-380DEECA2DF5

Species name: Stegana (Oxyphortica) valleculata Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:56D44D2D-0311-4A1A-B983-A0374959F113

Species name: Stegana (Oxyphortica) wanhei Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:D00C2F60-7938-461C-A234-B48C76A40FB2

Species name: Stegana (Oxyphortica) yangjin Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:2316FD6E-5ED4-43EA-A3B3-1F48275BE2F8

Species name: Stegana (Oxyphortica) hypophaia Zhang & Chen sp. nov.

urn:lsid:zoobank.org:act:072AD3E7-F24B-4605-83EF-1CF9E9FA41D8.

Funding

This work was supported by National Natural Science Foundation of China (Nos. 31672321, 31093430). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

4 Citations 3,870 Views 236 Downloads

Your institution may have Open Access funds available for qualifying authors. See if you qualify

Publish for free

Comment on Articles or Preprints and we'll waive your author fee
Learn more

Five new journals in Chemistry

Free to publish • Peer-reviewed • From PeerJ
Find out more