PeerJ Editor, Author & Reviewer

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Contributions by role

Contributions by subject area

Fabiano Thompson

PeerJ Editor, Author & Reviewer

Summary

Oceanographer and Professor of Marine Biology of the Institute of Biology and SAGE-COPPE of the Federal University of Rio de Janeiro (UFRJ). Our research group focuses mainly on marine microbiology.

Biodiversity Biological Oceanography Biotechnology Marine Biology Microbiology Taxonomy

Editorial Board Member

PeerJ - the Journal of Life & Environmental Sciences

Past or current institution affiliations

Universidade Federal do Rio de Janeiro

Work details

Professor

Federal University of Rio de Janeiro-UFRJ

Marine Biology

Websites

Thompson Lab

PeerJ Contributions

November 15, 2024

The complete mitochondrial DNA of the carnivorous sponge Lycopodina hypogea is putatively complemented by microDNAs

Thiago Silva de Paula, Dora de Moura Barbosa Leite, Gisele Lobo-Hajdu, Jean Vacelet, Fabiano Thompson, Eduardo Hajdu

https://doi.org/10.7717/peerj.18255 PubMed 39559335

April 2, 2019

Environmental modulation of the proteomic profiles from closely phylogenetically related populations of the red seaweed Plocamium brasiliense

Gabriela Calegario, Lucas Freitas, Eidy Santos, Bruno Silva, Louisi Oliveira, Gizele Garcia, Cláudia Omachi, Renato Pereira, Cristiane Thompson, Fabiano Thompson

https://doi.org/10.7717/peerj.6469 PubMed 30972241

October 26, 2018

Inhibitory effect of microalgae and cyanobacteria extracts on influenza virus replication and neuraminidase activity

Thauane Silva, Paulo S. Salomon, Lidilhone Hamerski, Juline Walter, Rafael B. Menezes, José Edson Siqueira, Aline Santos, Jéssica Aparecida Morais Santos, Natália Ferme, Thaise Guimarães, Giovana O. Fistarol, Paulo I. Hargreaves, Cristiane Thompson, Fabiano Thompson, Thiago Moreno Souza, Marilda Siqueira, Milene Miranda

https://doi.org/10.7717/peerj.5716 PubMed 30386690

August 15, 2017

Aura-biomes are present in the water layer above coral reef benthic macro-organisms

Kevin Walsh, J. Matthew Haggerty, Michael P. Doane, John J. Hansen, Megan M. Morris, Ana Paula B. Moreira, Louisi de Oliveira, Luciana Leomil, Gizele D. Garcia, Fabiano Thompson, Elizabeth A. Dinsdale

https://doi.org/10.7717/peerj.3666 PubMed 28828261

January 14, 2016

Comparative genomics of Synechococcus and proposal of the new genus Parasynechococcus

Felipe Coutinho, Diogo Antonio Tschoeke, Fabiano Thompson, Cristiane Thompson

https://doi.org/10.7717/peerj.1522 PubMed 26839740

June 16, 2015

Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review

Felipe H. Coutinho, Pedro M. Meirelles, Ana Paula B. Moreira, Rodolfo P. Paranhos, Bas E. Dutilh, Fabiano L. Thompson

https://doi.org/10.7717/peerj.1008 PubMed 26157601

February 10, 2015

Diversity and ecological structure of vibrios in benthic and pelagic habitats along a latitudinal gradient in the Southwest Atlantic Ocean

Luciane A. Chimetto Tonon, Bruno Sergio de O. Silva, Ana Paula B. Moreira, Cecilia Valle, Nelson Alves, Giselle Cavalcanti, Gizele Garcia, Rubens M. Lopes, Ronaldo B. Francini-Filho, Rodrigo L. de Moura, Cristiane C. Thompson, Fabiano L. Thompson

https://doi.org/10.7717/peerj.741 PubMed 25699199

August 26, 2014

A survey on cultivable heterotrophic bacteria inhabiting a thermally unstratified water column in an Atlantic Rainforest lake

Cláudia I. Lima-Bittencourt, Patrícia S. Costa, Mariana P. Reis, Alexandre B. Santos, Francisco A.R. Barbosa, Jean L. Valentin, Fabiano L. Thompson, Edmar Chartone-Souza, Andréa M.A. Nascimento

https://doi.org/10.7717/peerj.478 PubMed 25237594

June 19, 2014

Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil

Ana Paula B. Moreira, Gwen Duytschaever, Luciane A. Chimetto Tonon, Adriana M. Fróes, Louisi S. de Oliveira, Gilberto M. Amado-Filho, Ronaldo B. Francini-Filho, Paul De Vos, Jean Swings, Cristiane C. Thompson, Fabiano L. Thompson

https://doi.org/10.7717/peerj.427 PubMed 25024905

June 17, 2014

Diversity and antimicrobial potential of culturable heterotrophic bacteria associated with the endemic marine sponge Arenosclera brasiliensis

Cintia P.J. Rua, Amaro E. Trindade-Silva, Luciana R. Appolinario, Tainá M. Venas, Gizele D. Garcia, Lucas S. Carvalho, Alinne Lima, Ricardo Kruger, Renato C. Pereira, Roberto G.S. Berlinck, Rogério A.B. Valle, Cristiane C. Thompson, Fabiano Thompson

https://doi.org/10.7717/peerj.419 PubMed 25024903

July 16, 2013

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates

AK Gregg, M Hatay, AF Haas, NL Robinett, K Barott, MJA Vermeij, KL Marhaver, P Meirelles, F Thompson, F Rohwer

https://doi.org/10.7717/peerj.107 PubMed 23882444

January 2, 2017 - Version: 1

Proposal of a new genome-based taxonomy for Cyanobacteria

Juline M Walter, Felipe H Coutinho, Bas E Dutilh, Fabiano Thompson, Cristiane C Thompson

https://doi.org/10.7287/peerj.preprints.2676v1

September 27, 2015 - Version: 1

Microbial interactions and implications for oil biodegradation process in mangrove sediments

Adriana Daudt Grativol, Albany Marchetti, Rita M Wetler-Tonini, Thiago M Venancio, Carlos EN Gatts, Fabiano L Thompson, Carlos E Rezende

https://doi.org/10.7287/peerj.preprints.1398v1

Academic Editor on

April 30, 2019

Exploring the transcriptome of luxI⁻ and ΔainS mutants and the impact of N-3-oxo-hexanoyl-L- and N-3-hydroxy-decanoyl-L-homoserine lactones on biofilm formation in Aliivibrio salmonicida

Miriam Khider, Hilde Hansen, Erik Hjerde, Jostein A. Johansen, Nils Peder Willassen

https://doi.org/10.7717/peerj.6845 PubMed 31106062

November 17, 2017

Coral-associated viral communities show high levels of diversity and host auxiliary functions

Karen D. Weynberg, Patrick W. Laffy, Elisha M. Wood-Charlson, Dmitrij Turaev, Thomas Rattei, Nicole S. Webster, Madeleine J.H. van Oppen

https://doi.org/10.7717/peerj.4054 PubMed 29158985

June 6, 2017

Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea

Maha T. Khalil, Jessica Bouwmeester, Michael L. Berumen

https://doi.org/10.7717/peerj.3410 PubMed 28603671

April 19, 2017

The genomic sequence of Exiguobacterium chiriqhucha str. N139 reveals a species that thrives in cold waters and extreme environmental conditions

Ana Gutiérrez-Preciado, Carlos Vargas-Chávez, Mariana Reyes-Prieto, Omar F. Ordoñez, Diego Santos-García, Tania Rosas-Pérez, Jorge Valdivia-Anistro, Eria A. Rebollar, Andrés Saralegui, Andrés Moya, Enrique Merino, María Eugenia Farías, Amparo Latorre, Valeria Souza

https://doi.org/10.7717/peerj.3162 PubMed 28439458

November 15, 2016

The scavenger receptor repertoire in six cnidarian species and its putative role in cnidarian-dinoflagellate symbiosis

Emilie F. Neubauer, Angela Z. Poole, Olivier Detournay, Virginia M. Weis, Simon K. Davy

https://doi.org/10.7717/peerj.2692 PubMed 27896028

November 10, 2016

Pico and nanoplankton abundance and carbon stocks along the Brazilian Bight

Catherine Gérikas Ribeiro, Adriana Lopes dos Santos, Dominique Marie, Vivian Helena Pellizari, Frederico Pereira Brandini, Daniel Vaulot

https://doi.org/10.7717/peerj.2587 PubMed 27867760

September 20, 2016

In situ visualization of bacterial populations in coral tissues: pitfalls and solutions

Naohisa Wada, Frederic J. Pollock, Bette L. Willis, Tracy Ainsworth, Nobuhiro Mano, David G. Bourne

https://doi.org/10.7717/peerj.2424 PubMed 27688961

July 27, 2016

Further evidence of Chelonid herpesvirus 5 (ChHV5) latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles

Alonzo Alfaro-Núñez, Anders Miki Bojesen, Mads F. Bertelsen, Nathan Wales, George H. Balazs, M. Thomas P. Gilbert

https://doi.org/10.7717/peerj.2274 PubMed 27547576

January 14, 2016

Trophic ecology of sea urchins in coral-rocky reef systems, Ecuador

Nancy Cabanillas-Terán, Peggy Loor-Andrade, Ruber Rodríguez-Barreras, Jorge Cortés

https://doi.org/10.7717/peerj.1578 PubMed 26839748

November 24, 2015

Dynamics in benthic community composition and influencing factors in an upwelling-exposed coral reef on the Pacific coast of Costa Rica

Ines Stuhldreier, Celeste Sánchez-Noguera, Florian Roth, Carlos Jiménez, Tim Rixen, Jorge Cortés, Christian Wild

https://doi.org/10.7717/peerj.1434 PubMed 26623190

August 6, 2015

Cryptic species obscure introduction pathway of the blue Caribbean sponge (Haliclona (Soestella) caerulea), (order: Haplosclerida) to Palmyra Atoll, Central Pacific

Ingrid S. Knapp, Zac H. Forsman, Gareth J. Williams, Robert J. Toonen, James J. Bell

https://doi.org/10.7717/peerj.1170 PubMed 26339548

August 4, 2015

The 2014 coral bleaching and freshwater flood events in Kāneʻohe Bay, Hawaiʻi

Keisha D. Bahr, Paul L. Jokiel, Kuʻulei S. Rodgers

https://doi.org/10.7717/peerj.1136 PubMed 26290792

July 7, 2015

Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs

JHR Burns, D Delparte, RD Gates, M Takabayashi

https://doi.org/10.7717/peerj.1077 PubMed 26207190

June 16, 2015

Deep sequencing of the viral phoH gene reveals temporal variation, depth-specific composition, and persistent dominance of the same viral phoH genes in the Sargasso Sea

Dawn B. Goldsmith, Rachel J. Parsons, Damitu Beyene, Peter Salamon, Mya Breitbart

https://doi.org/10.7717/peerj.997 PubMed 26157645

March 31, 2015

Proteomic responses to hypoxia at different temperatures in the great scallop (Pecten maximus)

Sébastien Artigaud, Camille Lacroix, Joëlle Richard, Jonathan Flye-Sainte-Marie, Luca Bargelloni, Vianney Pichereau

https://doi.org/10.7717/peerj.871 PubMed 25861557

February 17, 2015

First record of multi-species synchronous coral spawning from Malaysia

Alvin Chelliah, Halimi Bin Amar, Julian Hyde, Katie Yewdall, Peter D. Steinberg, James R. Guest

https://doi.org/10.7717/peerj.777 PubMed 25737817

May 13, 2014

Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico

Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Mónica Medina

https://doi.org/10.7717/peerj.386 PubMed 24883247

March 13, 2014

Upward nitrate transport by phytoplankton in oceanic waters: balancing nutrient budgets in oligotrophic seas

Tracy A. Villareal, Cynthia H. Pilskaln, Joseph P. Montoya, Mark Dennett

https://doi.org/10.7717/peerj.302 PubMed 24688877

July 16, 2013

Visualization of oxygen distribution patterns caused by coral and algae

Andreas F. Haas, Allison K. Gregg, Jennifer E. Smith, Maria L. Abieri, Mark Hatay, Forest Rohwer

https://doi.org/10.7717/peerj.106 PubMed 23882443