Charles Warden
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Charles D Warden


Summary

I am currently a Bioinformatics Specialist in the Integrative Genomics Core at City of Hope. I assist scientists with next-generation sequencing (and sometimes microarray) analysis. As needed, I also develop algorithms for genomic analysis.

My work mostly currently focuses on cancer research, but I also assist with basic biology and virology research. I also have published evolutionary genomics papers.

Bioinformatics Biotechnology Computational Biology Genetics Genomics Oncology Translational Medicine Virology

Institution affiliations

Work details

Bioinformatics Specialist

City of Hope
Integrative Genomics Core, Department of Molecular and Cellular Biology


Articles published in PeerJ


Preprints

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1 vote
06 Jul 2013

Interesting editorial! It looks like this article doesn't currently mention standard high-throughput databases. Although most scientists should be aware of these, data depositi...

1 vote
09 Oct 2013

Interesting paper - I've noticed that exon coverage has been low in exosome RNA-Seq experiments, and it was interesting to see how much non-coding reads specifically aligned to rRN...

1 vote
28 Mar 2014

Interesting paper! 1) My understanding was that the population frequencies (75%, 90%, and 99%) were used to try and estimate the specificity of the SNP calls (so, variants fou...

14 Nov 2013

This sounds like an interesting package. A Bioconductor package for alternative splicing analysis would certainly be useful to the community. However, I think it would help to...

02 Jan 2014

This paper looks like it has the potential to be quite useful. However, it seems a bit short and I think it would help to expand on the following details: 1) Do you provide a...

12 Feb 2014

Interesting paper. In table 1, maybe it would help to show the same answer frequencies for before and after taking class? At first, I was confused how 82/116 could answer "YES"...

15 Apr 2014

Cool paper! Perhaps it would help to provide a link to the software (e.g. https://github.com/scikit-image/scikit-image) in the abstract? I eventually figured it out from link...