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Charles D Warden
Summary
I am currently a Bioinformatics Specialist in the Integrative Genomics Core at City of Hope. I assist scientists with next-generation sequencing (and sometimes microarray) analysis. As needed, I also develop algorithms for genomic analysis.
My work mostly currently focuses on cancer research, but I also assist with basic biology and virology research. I also have published evolutionary genomics papers.
Bioinformatics Biotechnology Computational Biology Genetics Genomics Oncology Translational Medicine Virology
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Bioinformatics Specialist
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Interesting editorial! It looks like this article doesn't currently mention standard high-throughput databases. Although most scientists should be aware of these, data depositi...
Interesting paper - I've noticed that exon coverage has been low in exosome RNA-Seq experiments, and it was interesting to see how much non-coding reads specifically aligned to rRN...
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms
Interesting paper! 1) My understanding was that the population frequencies (75%, 90%, and 99%) were used to try and estimate the specificity of the SNP calls (so, variants fou...
This sounds like an interesting package. A Bioconductor package for alternative splicing analysis would certainly be useful to the community. However, I think it would help to...
A simple scaling normalization for comparing ChIP-Seq samples
This paper looks like it has the potential to be quite useful. However, it seems a bit short and I think it would help to expand on the following details: 1) Do you provide a...
Interesting paper. In table 1, maybe it would help to show the same answer frequencies for before and after taking class? At first, I was confused how 82/116 could answer "YES"...
Cool paper! Perhaps it would help to provide a link to the software (e.g. https://github.com/scikit-image/scikit-image) in the abstract? I eventually figured it out from link...