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August 2025

Table of Contents - PeerJ (Biology Articles)

August 28, 2025

Uncovering tissue-specific endophytic microbiota composition and activity in Rhizophora mangle L.: a metagenomic and metatranscriptomic approach

Valentina Cárdenas-Hernández, Cesar Lemos-Lucumi, Nelson Toro-Perea

https://doi.org/10.7717/peerj.19728 PubMed 40895054

August 29, 2025

A mini-review of the relationship between intestinal microecology and acute respiratory distress syndrome

Lujia Chen, Hao He, Cheng Li, Sha Nie, Dong Liu, Qiwei Shi

https://doi.org/10.7717/peerj.19995 PubMed 40900748

August 29, 2025

Analysis of risk factors for poor prognosis in patients with renal insufficiency combined with Enterobacteriaceae bloodstream infection: a retrospective study

Yunpeng Wang, Jijing Zhao

https://doi.org/10.7717/peerj.19993 PubMed 40900747

August 29, 2025

Analysis of microbial diversity and functions in sediments and overlying water of the Shiliu River

Yazi Li, Shuhong Zhang, Yumei Guo, Ke Xu, Xiqing Zhang, Mengfei Pan, Qiaoping Sun, Yanfang Zhang, Yongshan Fan

https://doi.org/10.7717/peerj.19979 PubMed 40900750

August 25, 2025

Impact of fructooligosaccharides on gut microbiota composition and metabolite production: implications for childhood obesity

CanFeng Mo, Shan Zhou, Zhi Du, Xiangxin Huang

https://doi.org/10.7717/peerj.19894 PubMed 40895066

August 25, 2025

Antimicrobial resistance and plasmid-associated virulence genes in Salmonella isolated from pigs, pork, and humans in border provinces of Thailand and neighboring countries

Siraphatson Wetchasirigul, Jiratchaya Puangseree, Sunpetch Angkititrakul, Rangsiya Prathan, Songsak Srisanga, Rungtip Chuanchuen

https://doi.org/10.7717/peerj.19884 PubMed 40895049

August 21, 2025

Inoculation with Pseudomonas spp. in Solanum lycopersicum increases yield and fruit quality under nutrient shortage conditions

Patricia Torres-Solórzano, Homero Reyes-De la Cruz, Josué Altamirano-Hernández, Lourdes Macías-Rodríguez, Jesús Campos-García, Alfonso Luna-Cruz

https://doi.org/10.7717/peerj.19796 PubMed 40860672

August 19, 2025

Effects of Undaria pinnatifida-derived brown algae polysaccharide (UPS) on the nutritional composition, digestive capacity, immune performance and intestinal microbiota of juvenile sea cucumber (Apostichopus japonicus)

Jinghao Dong, Hailong Ma, Kuimei Liu, Wei Zhou, Suya Liu, Yongjun Sun, Wenming Ju, Shanshan Wang

https://doi.org/10.7717/peerj.19944 PubMed 40860657

August 19, 2025

Effect of acid-suppressive drugs on endoscopic transmural drainage of peripancreatic fluid collections—a randomized controlled trial

Yaoting Li, Tingting Yu, Senlin Hou, Wei Zhang, Haiming Du, Yankun Hou, Jiao Tian, Lichao Zhang

https://doi.org/10.7717/peerj.19872 PubMed 40860654

August 19, 2025

Gram staining reveals diverse bacterial associations in coral cell-associated microbial aggregates in the Pacific Ocean

Chutimon Singhakarn, Robert J. Toonen, Thierry M. Work

https://doi.org/10.7717/peerj.19867 PubMed 40860667

August 15, 2025

Epidemiology and genetic characteristics of Clostridioides difficile isolates in Northwest China

Yang Li, Shujuan An, Hongjia Sun, Meimei Hu, Yanmei Xu, Yaming Xi

https://doi.org/10.7717/peerj.19877 PubMed 40832583

August 13, 2025

Use ATCCfinder to identify commercially available American Type Culture Collection strains based on sequence queries

Samuel I. Koehler, Earl A. Middlebrook, Blake T. Hovde, Erik R. Hanschen

https://doi.org/10.7717/peerj.19832 PubMed 40821988

August 13, 2025

Chaetomium globosum from Alisma orientale (Sam.) Juzep. enhances the antioxidative stress capacity of Caenorhabditis elegans

Nayu Shen, Zhao Chen, Siyu Wang, Mingqi Zhang, Yujie Jia, Xinyu Zhang, Yirong Xiao, Zizhong Tang, Qingfeng Li, Ming Yuan, Tongliang Bu

https://doi.org/10.7717/peerj.19827 PubMed 40821996

August 13, 2025

Sampling strategies for digestive system flora studies: current research and perspectives

Xiaobo Liu, Xia Cheng, Ziye Gao, Jun Pan, Shizhen Luo, Pei Liu, Hui Wen, Shu Jin

https://doi.org/10.7717/peerj.19810 PubMed 40821994

August 12, 2025

Antigenic and mutational insights into the Nipah virus G glycoprotein: implications for viral entry, host specificity, therapeutics, and vaccine development

Nur Syafiqah Mohamad Nasir, Yasmin Khairani Muhammad Ismadi, Noreafifah Semail, Wan Alif Syazwani Wan Alias, Nik Mohd Noor Nik Zuraina, Nik Yusnoraini Yusof, Zakuan Zainy Deris, Mohd Zulkifli Salleh

https://doi.org/10.7717/peerj.19835 PubMed 40852381

August 12, 2025

Substrate type and light intensity determine lampenflora concentration on paleontological remains in show caves

Elena Piano, Marta Zunino, Giuseppe Nicolosi, Isabella Nicole Pisoni, Alice Cimenti, Alberto Cina, Marco Isaia

https://doi.org/10.7717/peerj.19622 PubMed 40821970

August 11, 2025

Kinetic parameters of Scenedesmus obliquus (Chlorophyceae) growth and yield under different cultivation conditions in vitro

Arialdo M. Silveira Júnior, Silvia Maria Mathes Faustino, Fabrício Holanda e Holanda, Irlon Maciel Ferreira, Alan Cavalcanti da Cunha

https://doi.org/10.7717/peerj.17879 PubMed 40821995

August 5, 2025

Characteristics of soil microbial phospholipid fatty acids in artificial, black-soil mountain degraded, and natural grasslands in the source region of the Three Rivers

Lele Xie, Yushou Ma, Yanlong Wang, Yuan Ma, Xiaoli Wang, Ying Liu

https://doi.org/10.7717/peerj.19837 PubMed 40786110

August 5, 2025

Prediction of microbe-drug associations using a CNN-Bernoulli random forest model

Zihao Song, Qingnuo Li, Jincheng Zhao, Qinggang Bu, Zekang Bian, Jia Qu

https://doi.org/10.7717/peerj.19637 PubMed 40786104

August 1, 2025

Diversity, antibacterial and antioxidant activities of fungi associated with Apis cerana

Pu Cui, Guanxiu Guan, Zhuoting Gan, Ting Yao

https://doi.org/10.7717/peerj.19762 PubMed 40761805

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