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Current Issue - August 2025

Table of Contents - PeerJ (Biology Articles)

August 28, 2025

Uncovering tissue-specific endophytic microbiota composition and activity in Rhizophora mangle L.: a metagenomic and metatranscriptomic approach

Valentina Cárdenas-Hernández, Cesar Lemos-Lucumi, Nelson Toro-Perea

https://doi.org/10.7717/peerj.19728 PubMed 40895054

August 27, 2025

Exploration of prognostic genes associated with lymphangiogenesis in breast cancer based on transcriptomics and experimental verification

Chen Liu, Tuo Zhang, Fushen Luo, Xiaofeng Yang, Yadong Li, Tonghui Yi, Shuang Wu, Yanbing Wang, Yueping Zhu, Kun Zhao

https://doi.org/10.7717/peerj.19890 PubMed 40895068

August 22, 2025

Analysis of novel therapeutic targets and construction of a prognostic model for hepatocellular carcinoma

Pengyuan Lei, Wenfeng Li, Dafei Xie, Hua Guan, Xin Huang, Bo Huang

https://doi.org/10.7717/peerj.19899 PubMed 40860678

August 20, 2025

Genome-wide discovery of circulating cell-free DNA methylation signatures for the differential diagnosis of triple-negative breast cancer

Lijing Gao, Yanbing Li, Chao Qu, Yan Dong, Qingzhen Fu, Haibo Zhou, Ning Zhao, Xianyu Zhang, Da Pang, Yashuang Zhao

https://doi.org/10.7717/peerj.19888 PubMed 40860669

August 20, 2025

Transformative insights from transcriptome analysis of colorectal cancer patient tissues: identification of four key prognostic genes

Nevin Belder, Sulgun Charyyeva, Edibe Ece Abaci Oruc, Hakiimu Kawalya, Namood-e Sahar, Nader Omidvar, Berna Savas, Arzu Ensari, Hilal Ozdag

https://doi.org/10.7717/peerj.19852 PubMed 40860666

August 19, 2025

Prognostic role and functional impact of cadherin genes in non-small cell lung cancer tumorigenesis: mechanistic insights from in silico and in vitro analyses

Quanzhong Yang, Nan Feng, Feifei Shen, Lin Bai, Rihui Li, Shuang Li, Weikai Zhang

https://doi.org/10.7717/peerj.19785 PubMed 40860670

August 18, 2025

ALDOB is a prognostic biomarker and a potential immunotherapy target for clear cell renal cell carcinoma

Wu Xu, Dali Wu, Cuilian Li, Lingfei Yan, Bo Peng, Yang Luo, Dawei Liu, Qing Li, Tao Wang

https://doi.org/10.7717/peerj.19869 PubMed 40852386

August 14, 2025

Topology-aware pathway analysis of spatial transcriptomics

Siras Hakobyan, Maria Schmidt, Hans Binder, Arsen Arakelyan

https://doi.org/10.7717/peerj.19729 PubMed 40827204

August 13, 2025

Use ATCCfinder to identify commercially available American Type Culture Collection strains based on sequence queries

Samuel I. Koehler, Earl A. Middlebrook, Blake T. Hovde, Erik R. Hanschen

https://doi.org/10.7717/peerj.19832 PubMed 40821988

August 13, 2025

Identification of hub genes and prediction of the ceRNA network in adult sepsis

Kangyi Xue, Kan Wu, Haoxian Luo, Haihua Luo, Zhaoqian Zhong, Fen Li, Lei Li, Li Chen

https://doi.org/10.7717/peerj.19619 PubMed 40821971

August 12, 2025

RpNGS: an automated platform for pathogen identification and monitoring in clinical metagenomics data

Jing Zhou, Yao Tian, Min Yang, Ting Hao, Jun Ma, Shengyu Wang

https://doi.org/10.7717/peerj.19849 PubMed 40821992

August 11, 2025

Bioinformatics analysis of laryngeal squamous cell carcinoma based on the high infection rate of HPV in Northwest China

Fan Guo, Shurong Li, Shiqi Yan, Yuqiao Zhang, Guangke Wang, Ruixia Ma

https://doi.org/10.7717/peerj.19851 PubMed 40821990

August 11, 2025

Development of a relapse-related RiskScore model to predict the drug sensitivity and prognosis for patients with ovarian cancer

Zhixin Jin, Xuegu Wang, Xiang Li, Shasha Yang, Biao Ding, Jiaojiao Fei, Xiaojing Wang, Chengli Dou

https://doi.org/10.7717/peerj.19764 PubMed 40821986

August 6, 2025

High cyclic GMP-AMP synthase and stimulator of interferon genes in cholangiocarcinoma suggest their potential as targets for treatment

Han Ni Zin Myint, Paksiree Saranaruk, Natnicha Paungpan, Sakda Waraasawapati, Chawalit Pairojkul, Saowaluk Saisomboon, Nutsara Settha, Jatuporn Pattanachot, Seiji Okada, Wunchana Seubwai, Amnat Kitkhuandee, Kanlayanee Sawanyawisuth, Kulthida Vaeteewoottacharn

https://doi.org/10.7717/peerj.19800 PubMed 40786100

August 5, 2025

Prediction of microbe-drug associations using a CNN-Bernoulli random forest model

Zihao Song, Qingnuo Li, Jincheng Zhao, Qinggang Bu, Zekang Bian, Jia Qu

https://doi.org/10.7717/peerj.19637 PubMed 40786104

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