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January 2025

Table of Contents - PeerJ (Biology Articles)

January 6, 2025

Antimicrobial activity of Lactobacillus spp. isolated from fermented foods and their inhibitory effect against foodborne pathogens

Athraa Oudah Hussein, Khalida Khalil, Nurul Aqilah Mohd Zaini, Ahmed Khassaf Al Atya, Wan Syaidatul Aqma

https://doi.org/10.7717/peerj.18541 PubMed 39790459

January 8, 2025

Clinical characteristics of pathogens in children with community-acquired pneumonia were analyzed via targeted next-generation sequencing detection

Junhua Zhao, Mingfeng Xu, Zheng Tian, Yu Wang

https://doi.org/10.7717/peerj.18810 PubMed 39802179

January 21, 2025

Priority effects, nutrition and milk glycan-metabolic potential drive Bifidobacterium longum subspecies dynamics in the infant gut microbiome

Nicholas Pucci, Joanne Ujčič-Voortman, Arnoud P. Verhoeff, Daniel R. Mende

https://doi.org/10.7717/peerj.18602 PubMed 39866568

January 24, 2025

Single-cell analysis of Mycobacterium tuberculosis with diverse drug resistance using surface-enhanced Raman spectroscopy (SERS)

Andrey Zyubin, Anastasia Lavrova, Marine Dogonadze, Evgenii Borisov, Eugene B. Postnikov

https://doi.org/10.7717/peerj.18830 PubMed 39872033

January 31, 2025

Effects of drought stress and Morchella inoculation on the physicochemical properties, enzymatic activities, and bacterial community of Poa pratensis L. rhizosphere soil

Wei Yin, Le Wang, Qian Han Shang, Yi Xin Li, Wei Sa, Quan Min Dong, Jian Liang

https://doi.org/10.7717/peerj.18793 PubMed 39902321

January 29, 2025

Biocontrol efficacy of Bacillus licheniformis and Bacillus amyloliquefaciens against rice pathogens

Mohsin Tariq, Mehvish Zahoor, Tahira Yasmeen, Tahir Naqqash, Muhammad Abdul Rehman Rashid, Muhammad Abdullah, Abdul Rafay Rafiq, Marriam Zafar, Iqra Irfan, Ijaz Rasul

https://doi.org/10.7717/peerj.18920 PubMed 39897490

January 16, 2025

The effectiveness of arbuscular mycorrhizal fungal species (Funneliformis mosseae, Rhizophagus intraradices, and Claroideoglomus etunicatum) in the biocontrol of root and crown rot pathogens, Fusarium solani and Fusarium mixture in pepper

Ayşin Bilgili

https://doi.org/10.7717/peerj.18438 PubMed 39830961

January 30, 2025

Acidity, sugar, and alcohol contents during the fermentation of Osmanthus-flavored sweet rice wine and microbial community dynamics

Ping Tian, Jiaqiong Wan, Tuo Yin, Li Liu, Hongbing Ren, Hanbing Cai, Xiaozhen Liu, Hanyao Zhang

https://doi.org/10.7717/peerj.18826 PubMed 39897497

January 13, 2025

Effects of tropical fruit blends on fermentative and pigmentation aspects of probiotic native cultured goat milk

Isadora Kaline Camelo Pires de Oliveira Galdino, Gabriel Monteiro da Silva, Miqueas Oliveira Morais da Silva, Giordanni Cabral Dantas, Elainy Virgínia dos Santos Pereira, Tiago Almeida de Oliveira, Karina Maria Olbrich dos Santos, Antonio Silvio do Egito, Flávia Carolina Alonso Buriti, Haíssa Roberta Cardarelli

https://doi.org/10.7717/peerj.18813 PubMed 39822982

January 30, 2025

Freshwater sponges in the southeastern U.S. harbor unique microbiomes that are influenced by host and environmental factors

Jacqueline G. Keleher, Taylor A. Strope, Noah E. Estrada, Allison M. Griggs Mathis, Cole G. Easson, Cara Fiore

https://doi.org/10.7717/peerj.18807 PubMed 39897492

January 20, 2025

Antibiotic exposure enriches streptococci carrying resistance genes in periodontitis plaque biofilms

Qian Zhang, Min Zhen, Xiaochen Wang, FengXiang Zhao, Yang Dong, Xiaoya Wang, Shengtao Gao, Jinfeng Wang, Wenyu Shi, Yifei Zhang

https://doi.org/10.7717/peerj.18835 PubMed 39850835

January 23, 2025

The bacterial composition signatures of perianal abscess and origin of infecting microbes

Song Han, Wenya Su, Kefeng Fan, Zhen Xu, Hai Xu, Mingyu Wang, Ling Li, Wenlong Shen

https://doi.org/10.7717/peerj.18855 PubMed 39866571

January 24, 2025

Tea cultivation: facilitating soil organic carbon accumulation and altering soil bacterial community—Leishan County, Guizhou Province, Southwest China

Yingge Shu, Shan Xie, Hong Fan, Chun Duan, Yuansheng Liu, Zuyong Chen

https://doi.org/10.7717/peerj.18683 PubMed 39872034

January 14, 2025

Benchmarking of a time-saving and scalable protocol for the extraction of DNA from diverse viromes

Michael Shamash, Saniya Kapoor, Corinne F. Maurice

https://doi.org/10.7717/peerj.18785 PubMed 39830964

January 20, 2025

Prevalence of nasopharyngeal bacteria during naturally occurring bovine respiratory disease in commercial stocker cattle

Afroza Akter, Hannah Teddleton, Marc Caldwell, Gina Pighetti, Phillip R. Myer, Madison T. Henniger, Liesel Schneider, Elizabeth Shepherd

https://doi.org/10.7717/peerj.18858 PubMed 39850838

January 15, 2025

Composition of soil fungal communities and microbial activity along an elevational gradient in Mt. Jiri, Republic of Korea

Ana Mitcov, Daegeun Ko, Kwanyoung Ko, Jaeho Kim, Neung-Hwan Oh, Hyun Seok Kim, Hyeyeong Choe, Haegeun Chung

https://doi.org/10.7717/peerj.18762 PubMed 39839660

January 23, 2025

Evolutionary patterns of the SSU rRNA (V4 region) secondary structure in genus Euplotes (Ciliophora, Spirotrichea): insights into cryptic species and primitive traits

Ratih Kusuma Wardani, Ragib Ahsan, Mann Kyoon Shin

https://doi.org/10.7717/peerj.18852 PubMed 39866570

January 13, 2025

Analysis of the anthropogenic effect on the Silencio River in Salvador Escalante, Michoacán, México

Mario Alberto Pérez-Méndez, Guadalupe Selene Fraga-Cruz, Gustavo Álvarez-Gómez, Fabricio Nápoles-Rivera, Gladys Jiménez-García, Rafael Maya-Yescas

https://doi.org/10.7717/peerj.18531 PubMed 39822980

January 28, 2025

Clinical considerations on antimicrobial resistance potential of complex microbiological samples

Norbert Solymosi, Adrienn Gréta Tóth, Sára Ágnes Nagy, István Csabai, Csongor Feczkó, Tamás Reibling, Tibor Németh

https://doi.org/10.7717/peerj.18802 PubMed 39897495

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