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March 2024

Table of Contents - PeerJ (Biology Articles)

March 1, 2024

Benchmarking a targeted 16S ribosomal RNA gene enrichment approach to reconstruct ancient microbial communities

Raphael Eisenhofer, Sterling Wright, Laura Weyrich

https://doi.org/10.7717/peerj.16770 PubMed 38440408

March 18, 2024

Integrating single-cell and bulk sequencing data to identify glycosylation-based genes in non-alcoholic fatty liver disease-associated hepatocellular carcinoma

Zhijia Zhou, Yanan Gao, Longxin Deng, Xiaole Lu, Yancheng Lai, Jieke Wu, Shaodong Chen, Chengzhong Li, Huiqing Liang

https://doi.org/10.7717/peerj.17002 PubMed 38515461

March 7, 2024

Characterization of PYL gene family and identification of HaPYL genes response to drought and salt stress in sunflower

Zhaoping Wang, Jiayan Zhou, Jian Zou, Jun Yang, Weiying Chen

https://doi.org/10.7717/peerj.16831 PubMed 38464756

March 29, 2024

Expression profiles and gene set enrichment analysis of the transcriptomes from the cancer tissue, white adipose tissue and paracancer tissue with colorectal cancer

Xiufeng Zhang, Rui Zhu, Ye Jiao, Halizere Simayi, Jialing He, Zhong Shen, Houdong Wang, Jun He, Suzhan Zhang, Fei Yang

https://doi.org/10.7717/peerj.17105 PubMed 38563016

March 25, 2024

Identification and validation of an endoplasmic-reticulum-stress-related gene signature as an effective diagnostic marker of endometriosis

Tao Wang, Mei Ji, Jing Sun

https://doi.org/10.7717/peerj.17070 PubMed 38549776

March 22, 2024

Comprehensive analysis of peroxisome proliferator-activated receptors to predict the drug resistance, immune microenvironment, and prognosis in stomach adenocarcinomas

Qing Jia, Baozhen Li, Xiulian Wang, Yongfen Ma, Gaozhong Li

https://doi.org/10.7717/peerj.17082 PubMed 38529307

March 15, 2024

Clinical significance of small nuclear ribonucleoprotein U1 subunit 70 in patients with hepatocellular carcinoma

Dong Jiang, Xia-Ling Zhu, Yan An, Yi-ran Li

https://doi.org/10.7717/peerj.16876 PubMed 38500533

March 13, 2024

EPI-SF: essential protein identification in protein interaction networks using sequence features

Sovan Saha, Piyali Chatterjee, Subhadip Basu, Mita Nasipuri

https://doi.org/10.7717/peerj.17010 PubMed 38495766

March 26, 2024

Genome-wide identification, subcellular localization, and expression analysis of the phosphatidyl ethanolamine-binding protein family reveals the candidates involved in flowering and yield regulation of Tartary buckwheat (Fagopyrum tataricum)

Mengping Nie, Li Li, Cailin He, Jing Lu, Huihui Guo, Xiao’an Li, Mi Jiang, Ruiling Zhan, Wenjun Sun, Junjie Yin, Qi Wu

https://doi.org/10.7717/peerj.17183 PubMed 38560476

March 28, 2024

Genome-wide identification of the CYP82 gene family in cucumber and functional characterization of CsCYP82D102 in regulating resistance to powdery mildew

Hongyu Wang, Pengfei Li, Yu Wang, Chunyu Chi, Guohua Ding

https://doi.org/10.7717/peerj.17162 PubMed 38560464

March 15, 2024

The impact of FASTQ and alignment read order on structural variant calling from long-read sequencing data

Kyle J. Lesack, James D. Wasmuth

https://doi.org/10.7717/peerj.17101 PubMed 38500526

March 29, 2024

An androgen receptor-based signature to predict prognosis and identification of ORC1 as a therapeutical target for prostate adenocarcinoma

Linjin Li, Dake Chen, Xiang Chen, Jianlong Zhu, Wenshuo Bao, Chengpeng Li, Feilong Miao, Rui Feng

https://doi.org/10.7717/peerj.16850 PubMed 38562999

March 6, 2024

Unsupervised AI reveals insect species-specific genome signatures

Yui Sawada, Ryuhei Minei, Hiromasa Tabata, Toshimichi Ikemura, Kennosuke Wada, Yoshiko Wada, Hiroshi Nagata, Yuki Iwasaki

https://doi.org/10.7717/peerj.17025 PubMed 38464746

March 28, 2024

scAnnoX: an R package integrating multiple public tools for single-cell annotation

Xiaoqian Huang, Ruiqi Liu, Shiwei Yang, Xiaozhou Chen, Huamei Li

https://doi.org/10.7717/peerj.17184 PubMed 38560451

March 26, 2024

Assessing the risk of concurrent mycoplasma pneumoniae pneumonia in children with tracheobronchial tuberculosis: retrospective study

Lin Liu, Jie Jiang, Lei Wu, De miao Zeng, Can Yan, Linlong Liang, Jiayun Shi, Qifang Xie

https://doi.org/10.7717/peerj.17164 PubMed 38560467

March 6, 2024

Scalable neighbour search and alignment with uvaia

Leonardo de Oliveira Martins, Alison E. Mather, Andrew J. Page

https://doi.org/10.7717/peerj.16890 PubMed 38464752

March 18, 2024

Deciphering the genomes of motility-deficient mutants of Vibrio alginolyticus 138-2

Kazuma Uesaka, Keita Inaba, Noriko Nishioka, Seiji Kojima, Michio Homma, Kunio Ihara

https://doi.org/10.7717/peerj.17126 PubMed 38515459

March 25, 2024

The interaction of InvF-RNAP is mediated by the chaperone SicA in Salmonella sp: an in silico prediction

André B. Farias, Daniel Cortés-Avalos, J. Antonio Ibarra, Ernesto Perez-Rueda

https://doi.org/10.7717/peerj.17069 PubMed 38549779

March 15, 2024

Exploring the antioxidant potential of chalcogen-indolizines throughout in vitro assays

Cleisson Schossler Garcia, Marcia Juciele da Rocha, Marcelo Heinemann Presa, Camila Simões Pires, Evelyn Mianes Besckow, Filipe Penteado, Caroline Signorini Gomes, Eder João Lenardão, Cristiani Folharini Bortolatto, César Augusto Brüning

https://doi.org/10.7717/peerj.17074 PubMed 38500528

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