Biology & Life sciences - Table of Contents

January 5, 2024

phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)

Liam J. Revell

https://doi.org/10.7717/peerj.16505 PubMed 38192598

January 4, 2024

Metagenomic assembly is the main bottleneck in the identification of mobile genetic elements

Jesse J. Kerkvliet, Alex Bossers, Jannigje G. Kers, Rodrigo Meneses, Rob Willems, Anita C. Schürch

https://doi.org/10.7717/peerj.16695 PubMed 38188174

January 26, 2024

Genome-wide association studies for earliness, MYMIV resistance, and other associated traits in mungbean (Vigna radiata L. Wilczek) using genotyping by sequencing approach

Manju Kohli, Hina Bansal, Gyan Prakash Mishra, Harsh Kumar Dikshit, Shashidhar B. Reddappa, Anirban Roy, Subodh Kumar Sinha, K.M. Shivaprasad, Nikki Kumari, Atul Kumar, Ranjeet R. Kumar, Ramakrishnan Madhavan Nair, Muraleedhar Aski

https://doi.org/10.7717/peerj.16653 PubMed 38288464

January 3, 2024

Genome-wide identification of the bHLH transcription factor family in Rosa persica and response to low-temperature stress

Yueying Zhuang, Lijun Zhou, Lifang Geng, Lv Jiang, Yunji Sui, Le Luo, Huitang Pan, Qixiang Zhang, Chao Yu

https://doi.org/10.7717/peerj.16568 PubMed 38188163

January 9, 2024

A new perspective on the taxonomy and systematics of Arvicolinae (Gray, 1821) and a new time-calibrated phylogeny for the clade

Charles B. Withnell, Simon G. Scarpetta

https://doi.org/10.7717/peerj.16693 PubMed 38223757

January 23, 2024

Diosgenin biosynthesis pathway and its regulation in Dioscorea cirrhosa L.

Yan Lin, Qiuyan Hu, Qiang Ye, Haohua Zhang, Ziyu Bao, Yongping Li, Luo Jian Mo

https://doi.org/10.7717/peerj.16702 PubMed 38282859

January 22, 2024

Virtual screening of flavonoids as potential RIPK1 inhibitors for neurodegeneration therapy

Asim Kumar Bepari, Swakkhar Shatabda, Hasan Mahmud Reza

https://doi.org/10.7717/peerj.16762 PubMed 38274328

January 22, 2024

Single-cell data revealed CD14-type and FCGR3A-type macrophages and relevant prognostic factors for predicting immunotherapy and prognosis in stomach adenocarcinoma

Mengling Li, Ming Lu, Jun Li, Qingqing Gui, Yibin Xia, Chao Lu, Hongchun Shu

https://doi.org/10.7717/peerj.16776 PubMed 38274323

January 8, 2024

Identification of a necroptosis-related gene signature for making clinical predictions of the survival of patients with lung adenocarcinoma

Xiaoping Zhou, Ming Zhao, Yingzi Fan, Ying Xu

https://doi.org/10.7717/peerj.16616 PubMed 38213773

January 2, 2024

Proteomics-based screening of AKR1B1 as a therapeutic target and validation study for sepsis-associated acute kidney injury

Lei Li, Zaiqin Ling, Xingsheng Wang, Xinxin Zhang, Yun Li, Guangsheng Gao

https://doi.org/10.7717/peerj.16709 PubMed 38188141

January 30, 2024

Resequencing and characterization of the first Corynebacterium pseudotuberculosis genome isolated from camel

Enrico Giovanelli Tacconi Gimenez, Marcus Vinicius Canário Viana, Thiago de Jesus Sousa, Flávia Aburjaile, Bertram Brenig, Artur Silva, Vasco Azevedo

https://doi.org/10.7717/peerj.16513 PubMed 38313017

January 16, 2024

GSDMD suppresses keratinocyte differentiation by inhibiting FLG expression and attenuating KCTD6-mediated HDAC1 degradation in atopic dermatitis

Yi Zhong, Taoyuan Huang, Xiaoli Li, Peiyi Luo, Bingjun Zhang

https://doi.org/10.7717/peerj.16768 PubMed 38250727

January 31, 2024

A ubiquitination-related risk model for predicting the prognosis and immunotherapy response of gastric adenocarcinoma patients

Shuai Shao, Yang Sun, Dongmei Zhao, Yu Tian, Yifan Yang, Nan Luo

https://doi.org/10.7717/peerj.16868 PubMed 38313020

January 19, 2024

Study of miRNA and lymphocyte subsets as potential biomarkers for the diagnosis and prognosis of gastric cancer

Jinpeng Li, Zixi Chen, Qian Li, Rongrong Liu, Jin Zheng, Qing Gu, Fenfen Xiang, Xiaoxiao Li, Mengzhe Zhang, Xiangdong Kang, Rong Wu

https://doi.org/10.7717/peerj.16660 PubMed 38259671

January 16, 2024

neo4jsbml: import systems biology markup language data into the graph database Neo4j

Guillaume Gricourt, Thomas Duigou, Sandra Dérozier, Jean-Loup Faulon

https://doi.org/10.7717/peerj.16726 PubMed 38250720

January 23, 2024

A peptide encoded by the circular form of the SHPRH gene induces apoptosis in neuroblastoma cells

Jingjing Gao, Hong Pan, Jie Li, Jun Jiang, Wenxian Wang

https://doi.org/10.7717/peerj.16806 PubMed 38282862

January 31, 2024

How reliable is metabarcoding for pollen identification? An evaluation of different taxonomic assignment strategies by cross-validation

Gilles San Martin, Louis Hautier, Dominique Mingeot, Benjamin Dubois

https://doi.org/10.7717/peerj.16567 PubMed 38313030

January 22, 2024

Regulation of lipid metabolism by APOE4 in intrahepatic cholangiocarcinoma via the enhancement of ABCA1 membrane expression

Liqiang Qian, Gang Wang, Bin Li, Haoyuan Su, Lei Qin

https://doi.org/10.7717/peerj.16740 PubMed 38274331

January 2, 2024

Identification and characterization of biomarkers associated with endoplasmic reticulum protein processing in cerebral ischemia-reperfusion injury

Liang-da Li, Yue Zhou, Shan-fen Shi

https://doi.org/10.7717/peerj.16707 PubMed 38188159

January 15, 2024

Proteomic detection of COX-2 pathway-related factors in patients with adenomyosis

Jihua Zhang, Luying Shi, Jingya Duan, Minmin Li, Canyu Li

https://doi.org/10.7717/peerj.16784 PubMed 38239300

January 18, 2024

DoAP2/ERF89 activated the terpene synthase gene DoPAES in Dendrobium officinale and participated in the synthesis of β-patchoulene

Decong Li, Lin Liu, Xiaohong Li, Guo Wei, Yongping Cai, Xu Sun, Honghong Fan

https://doi.org/10.7717/peerj.16760 PubMed 38250724

January 4, 2024

The expression and clinical significance of serine hydroxymethyltransferase2 in gastric cancer

Yiming Shan, Dongdong Liu, Yingze Li, Chu Wu, Yanwei Ye

https://doi.org/10.7717/peerj.16594 PubMed 38188143

January 30, 2024

Characterizing transcriptomic responses to sediment stress across location and morphology in reef-building corals

Jill Ashey, Hailey McKelvie, John Freeman, Polina Shpilker, Lauren H. Zane, Danielle M. Becker, Lenore Cowen, Robert H. Richmond, Valerie J. Paul, Francois O. Seneca, Hollie M. Putnam

https://doi.org/10.7717/peerj.16654 PubMed 38313033

January 2, 2024

Speeding up iterative applications of the BUILD supertree algorithm

Benjamin D. Redelings, Mark T. Holder

https://doi.org/10.7717/peerj.16624 PubMed 38188165

January 22, 2024

Genome-wide identification of the MADS-box gene family in Avena sativa and its role in photoperiod-insensitive oat

Jinsheng Nan, Jianghong An, Yan Yang, Guofen Zhao, Xiaohong Yang, Huiyan Liu, Bing Han

https://doi.org/10.7717/peerj.16759 PubMed 38274325