Biology & Life sciences - Table of Contents

November 15, 2023

Seq2science: an end-to-end workflow for functional genomics analysis

Maarten van der Sande, Siebren Frölich, Tilman Schäfers, Jos G.A. Smits, Rebecca R. Snabel, Sybren Rinzema, Simon J. van Heeringen

https://doi.org/10.7717/peerj.16380 PubMed 38025697

November 27, 2023

kakapo: easy extraction and annotation of genes from raw RNA-seq reads

Karolis Ramanauskas, Boris Igić

https://doi.org/10.7717/peerj.16456 PubMed 38034874

November 15, 2023

In-silico study of antisense oligonucleotide antibiotics

Erica S. Chen, Eric S. Ho

https://doi.org/10.7717/peerj.16343 PubMed 38025700

November 28, 2023

A novel long noncoding RNA (lncRNA), LINC02657(LASTR), is a prognostic biomarker associated with immune infiltrates of lung adenocarcinoma based on unsupervised cluster analysis

Fanming Kong, Xinyu Yang, Zhichao Lu, Zongheng Liu, Yang Yang, Ziheng Wang

https://doi.org/10.7717/peerj.16167 PubMed 38047034

November 8, 2023

Population structure of wild soybean (Glycine soja) based on SLAF-seq have implications for its conservation

Jing Meng, Guoqian Yang, Xuejiao Li, Yan Zhao, Shuilian He

https://doi.org/10.7717/peerj.16415 PubMed 37953790

November 27, 2023

Ropivacaine inhibits the malignant behavior of lung cancer cells by regulating retinoblastoma-binding protein 4

Weiai Jia, Junmei Shen, Sisi Wei, Chao Li, Jingpu Shi, Lianmei Zhao, Huiqun Jia

https://doi.org/10.7717/peerj.16471 PubMed 38034873

November 30, 2023

Potential of psychrotolerant rhizobacteria for the growth promotion of wheat (Triticum aestivum L.)

Muhammad Abdullah, Mohsin Tariq, Syeda Tahseen Zahra, Azka Ahmad, Marriam Zafar, Shad Ali

https://doi.org/10.7717/peerj.16399 PubMed 38050608

November 17, 2023

Genome-wide analysis of sugar transporter genes in maize (Zea mays L.): identification, characterization and their expression profiles during kernel development

Nan Sun, Yanfeng Liu, Tao Xu, Xiaoyan Zhou, Heyang Xu, Hongxia Zhang, Renhui Zhan, Limin Wang

https://doi.org/10.7717/peerj.16423 PubMed 38025667

November 21, 2023

Identification of key genes in sepsis-induced cardiomyopathy based on integrated bioinformatical analysis and experiments in vitro and in vivo

Dehua Liu, Tao Wang, Qingguo Wang, Peikang Dong, Xiaohong Liu, Qiang Li, Youkui Shi, Jingtian Li, Jin Zhou, Quan Zhang

https://doi.org/10.7717/peerj.16222 PubMed 38025678

November 8, 2023

Dex-Benchmark: datasets and code to evaluate algorithms for transcriptomics data analysis

Zhuorui Xie, Clara Chen, Avi Ma’ayan

https://doi.org/10.7717/peerj.16351 PubMed 37953774

November 7, 2023

circMSH3 is a potential biomarker for the diagnosis of colorectal cancer and affects the distant metastasis of colorectal cancer

Jian Shen, Yu Min, Jingen Luo, Xingkui Tang, Zeping Han, Wenfeng Luo, Fangmei Xie, Mingrong Cao, Taicheng Zhou, Jinhua He

https://doi.org/10.7717/peerj.16297 PubMed 37953794

November 23, 2023

Glyceraldehyde-3-phosphate dehydrogenase Gh_GAPDH9 is associated with drought resistance in Gossypium hirsutum

Shiwei Geng, Shengmei Li, Jieyin Zhao, Wenju Gao, Qin Chen, Kai Zheng, Yuxiang Wang, Yang Jiao, Yilei Long, Pengfei Liu, Yanying Qu, Quanjia Chen

https://doi.org/10.7717/peerj.16445 PubMed 38025668

November 14, 2023

Immune activity score to assess the prognosis, immunotherapy and chemotherapy response in gastric cancer and experimental validation

Xuan Wu, Fengrui Zhou, Boran Cheng, Gangling Tong, Minhua Chen, Lirui He, Zhu Li, Shaokang Yu, Shubin Wang, Liping Lin

https://doi.org/10.7717/peerj.16317 PubMed 38025711

November 13, 2023

A pyroptosis gene-based prognostic model for predicting survival in low-grade glioma

Hua Wang, Lin Yan, Lixiao Liu, Xianghe Lu, Yingyu Chen, Qian Zhang, Mengyu Chen, Lin Cai, Zhang’an Dai

https://doi.org/10.7717/peerj.16412 PubMed 38025749

November 29, 2023

Buried treasure in a public repository: Mining mitochondrial genes of 32 annelid species from sequence reads deposited in the Sequence Read Archive (SRA)

Genki Kobayashi

https://doi.org/10.7717/peerj.16446 PubMed 38047014

November 17, 2023

FTH1 indicates poor prognosis and promotes metastasis in head and neck squamous cell carcinoma

Qingyun Liao, Jing Yang, Zhaoyi Lu, Qingshan Jiang, Yongqian Gong, Lijun Liu, Hong Peng, Qin Wang, Xin Zhang, Zhifeng Liu

https://doi.org/10.7717/peerj.16493 PubMed 38025726

November 8, 2023

AL360181.1 promotes proliferation and invasion in colon cancer and is one of ten m6A-related lncRNAs that predict overall survival

Yi Luo, Yayun Xie, Dejun Wu, Bingyi Wang, Helei Lu, Zhiqiang Wang, Yingjun Quan, Bo Han

https://doi.org/10.7717/peerj.16123 PubMed 37953780

November 24, 2023

Development of a 5-mRNAsi-related gene signature to predict the prognosis of colon adenocarcinoma

Haifu Huang, Lin Lu, Yaoxuan Li, Xiumei Chen, Meng Li, Meiling Yang, Xuewu Huang

https://doi.org/10.7717/peerj.16477 PubMed 38025763

November 30, 2023

Gene mutation analysis of oral submucous fibrosis cancerization in Hainan Island

Bingxia Li, Xinyu Chen, Haiyu Xian, Qitao Wen, Tao Wang

https://doi.org/10.7717/peerj.16392 PubMed 38050610

November 28, 2023

Long-range RNA structures in the human transcriptome beyond evolutionarily conserved regions

Sergey Margasyuk, Lev Zavileyskiy, Changchang Cao, Dmitri Pervouchine

https://doi.org/10.7717/peerj.16414 PubMed 38047033

November 21, 2023

Head and neck squamous cell carcinoma-specific prognostic signature and drug sensitive subtypes based on programmed cell death-related genes

Chengbo Xu, Hongfang Xu, Baimei Liu

https://doi.org/10.7717/peerj.16364 PubMed 38025757

November 16, 2023

Integrated single-dose kinome profiling data is predictive of cancer cell line sensitivity to kinase inhibitors

Chinmaya U. Joisa, Kevin A. Chen, Matthew E. Berginski, Brian T. Golitz, Madison R. Jenner, Gabriela Herrera Loeza, Jen Jen Yeh, Shawn M. Gomez

https://doi.org/10.7717/peerj.16342 PubMed 38025707

November 3, 2023

Metagenomic 16S rDNA reads of in situ preserved samples revealed microbial communities in the Yongle blue hole

Hongxi Zhang, Taoshu Wei, Qingmei Li, Liang Fu, Lisheng He, Yong Wang

https://doi.org/10.7717/peerj.16257 PubMed 37941937

November 14, 2023

Data mining reveals tissue-specific expression and host lineage-associated forms of Apis mellifera filamentous virus

Robert S. Cornman

https://doi.org/10.7717/peerj.16455 PubMed 38025724

November 7, 2023

Identification of potential molecular mimicry in pathogen-host interactions

Kaylee D. Rich, Shruti Srivastava, Viraj R. Muthye, James D. Wasmuth

https://doi.org/10.7717/peerj.16339 PubMed 37953771

November 2023

Table of Contents - PeerJ (Biology Articles)

November 2023

Table of Contents - PeerJ (Biology Articles)

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