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September 2023

Table of Contents - PeerJ (Biology Articles)

September 15, 2023

Progress in the mechanism of autophagy and traditional Chinese medicine herb involved in alcohol-related liver disease

Wenwen Han, Haiyu Li, Hanqi Jiang, Hang Xu, Yifeng Lin, Jiahuan Chen, Chenchen Bi, Zheng Liu

https://doi.org/10.7717/peerj.15977 PubMed 37727691

September 27, 2023

Rivaroxaban, a direct inhibitor of coagulation factor Xa, attenuates adverse cardiac remodeling in rats by regulating the PAR-2 and TGF-β1 signaling pathways

Qian Zhang, Zhongfan Zhang, Weiwei Chen, Haikuo Zheng, Daoyuan Si, Wenqi Zhang

https://doi.org/10.7717/peerj.16097 PubMed 37786576

September 28, 2023

A metagenomic comparison of clearwater, probiotic, and Rapid BFT^TM on Pacific whiteleg shrimp, Litopenaeus vannamei cultures

Khor Waiho, Muhammad Syafiq Abd Razak, Mohd Zaidy Abdul Rahman, Zainah Zaid, Mhd Ikhwanuddin, Hanafiah Fazhan, Alexander Chong Shu-Chien, Nyok-Sean Lau, Ghazali Azmie, Ahmad Najmi Ishak, Mohammad Syahnon, Nor Azman Kasan

https://doi.org/10.7717/peerj.15758 PubMed 37790619

September 12, 2023

Microbiome analysis of Spodoptera frugiperda (Lepidoptera, Noctuidae) larvae exposed to Bacillus thuringiensis (Bt) endotoxins

Yuliana Castañeda-Molina, Sandra María Marulanda-Moreno, Clara Saldamando-Benjumea, Howard Junca, Claudia Ximena Moreno-Herrera, Gloria Cadavid-Restrepo

https://doi.org/10.7717/peerj.15916 PubMed 37719127

September 29, 2023

Genome-wide identification and analysis of Lateral Organ Boundaries Domain (LBD) transcription factor gene family in melon (Cucumis melo L.)

Ebru Derelli Tufekci

https://doi.org/10.7717/peerj.16020 PubMed 37790611

September 7, 2023

The evolution of SARS-CoV-2 and the COVID-19 pandemic

Yuanfang Si, Weidong Wu, Xia Xue, Xiangdong Sun, Yaping Qin, Ya Li, Chunjing Qiu, Yingying Li, Ziran Zhuo, Yang Mi, Pengyuan Zheng

https://doi.org/10.7717/peerj.15990 PubMed 37701824

September 28, 2023

Identification of CDT1 as a prognostic marker in human lung adenocarcinoma using bioinformatics approaches

Jing Jiang, Yu Zhang, Jun Wang, Xuefei Yang, Xingchang Ren, Hai Huang, Jue Wang, Jinhua Lu, Yazhen Zhong, Zechen Lin, Xianlei Lin, Yewei Jia, Shengyou Lin

https://doi.org/10.7717/peerj.16166 PubMed 37790630

September 20, 2023

YAP1 affects the prognosis through the regulation of stemness in endometrial cancer

Wei Kong, Yuzhen Huang, Peng Jiang, Yuan Tu, Ning Li, Jinyu Wang, Qian Zhou, Yunfeng Zheng, Shikai Gou, Chenfan Tian, Rui Yuan

https://doi.org/10.7717/peerj.15891 PubMed 37744228

September 18, 2023

Performance of multigene testing in cytologically indeterminate thyroid nodules and molecular risk stratification

Yuanyuan Zhou, Xinping Wu, Yuzhi Zhang, Zhiqiang Li, Xia Ge, Hao Chen, Yuan Mao, Wenbo Ding

https://doi.org/10.7717/peerj.16054 PubMed 37744220

September 22, 2023

Genome-wide analysis of the heat shock transcription factor family reveals saline-alkali stress responses in Xanthoceras sorbifolium

Lulu Li, Yiqian Ju, Cuiping Zhang, Boqiang Tong, Yizeng Lu, Xiaoman Xie, Wei Li

https://doi.org/10.7717/peerj.15929 PubMed 37753174

September 28, 2023

Time-calibrated phylogeny and full mitogenome sequence of the Galapagos sea lion (Zalophus wollebaeki) from scat DNA

Pacarina Asadobay, Diego O. Urquía, Sven Künzel, Sebastian A. Espinoza-Ulloa, Miguel Vences, Diego Páez-Rosas

https://doi.org/10.7717/peerj.16047 PubMed 37790631

September 28, 2023

Life on the edge—a changing genetic landscape within an iconic American pika metapopulation over the last half century

Kelly B. Klingler, Lyle B. Nichols, Evon R. Hekkala, Joseph A. E. Stewart, Mary M. Peacock

https://doi.org/10.7717/peerj.15962 PubMed 37790628

September 18, 2023

A new gnathosaurine (Pterosauria, Archaeopterodactyloidea) from the Late Jurassic of Portugal

Alexandra E. Fernandes, Victor Beccari, Alexander W. A. Kellner, Octávio Mateus

https://doi.org/10.7717/peerj.16048 PubMed 37744218

September 28, 2023

Areas of spatial overlap between common bottlenose dolphin, recreational boating, and small-scale fishery: management insights from modelling exercises

Gabriella La Manna, Fabio Ronchetti, Francesco Perretti, Giulia Ceccherelli

https://doi.org/10.7717/peerj.16111 PubMed 37790616

September 15, 2023

Divergent recovery trajectories of intertidal and subtidal coral communities highlight habitat-specific recovery dynamics following bleaching in an extreme macrotidal reef environment

P. Elias Speelman, Michael Parger, Verena Schoepf

https://doi.org/10.7717/peerj.15987 PubMed 37727686

September 7, 2023

Identification and expression analysis of the small auxin-up RNA (SAUR) gene family in Lycium ruthenicum

Jing Hu, Qiushi Yu, Shengxiu Jiang, Xiaoke Hu, Xuemin Li, Zhongchao Liu

https://doi.org/10.7717/peerj.15941 PubMed 37701838

September 28, 2023

Systematic bioprospection for cellulolytic actinomycetes in the Chihuahuan Desert: isolation and enzymatic profiling

Janneth Escudero-Agudelo, Juan Martínez-Villalobos, Hector Arocha-Garza, Luis Jesús Galán-Wong, Hamlet Avilés-Arnaut, Susana De la Torre-Zavala

https://doi.org/10.7717/peerj.16119 PubMed 37790635

September 8, 2023

EXOSC10 is a novel hepatocellular carcinoma prognostic biomarker: a comprehensive bioinformatics analysis and experiment verification

Zhi-Yong Meng, Yu-Chun Fan, Chao-Sheng Zhang, Lin-Li Zhang, Tong Wu, Min-Yu Nong, Tian Wang, Chuang Chen, Li-He Jiang

https://doi.org/10.7717/peerj.15860 PubMed 37701829

September 25, 2023

Comparative analysis of codon usage patterns and phylogenetic implications of five mitochondrial genomes of the genus Japanagallia Ishihara, 1955 (Hemiptera, Cicadellidae, Megophthalminae)

Min Li, Jiajia Wang, Renhuai Dai, Guy Smagghe, Xianyi Wang, Siying You

https://doi.org/10.7717/peerj.16058 PubMed 37780390

September 25, 2023

Berberine protects hepatocyte from hypoxia/reoxygenation-induced injury through inhibiting circDNTTIP2

Yi Zhu, Junhui Li, Pengpeng Zhang, Bo Peng, Cai Li, Yingzi Ming, Hong Liu

https://doi.org/10.7717/peerj.16080 PubMed 37780378

September 7, 2023

Temporal variation of the relationships between rice yield and climate variables since 1925

Hungyen Chen, Yi-Chien Wu, Chih-Yung Teng

https://doi.org/10.7717/peerj.16045 PubMed 37701832

September 12, 2023

Comparative expression analysis of sucrose phosphate synthase gene family in a low and high sucrose Pakistani sugarcane cultivars

Robi Niazi, Gulnaz Parveen, Muhammad Noman, Naila Mukhtar, Naila Hadayat, Amtul Sami, Binish Khaliq, Jiban Shrestha, Irfan Ullah

https://doi.org/10.7717/peerj.15832 PubMed 37719124

September 25, 2023

DeepMethylation: a deep learning based framework with GloVe and Transformer encoder for DNA methylation prediction

Zhe Wang, Sen Xiang, Chao Zhou, Qing Xu

https://doi.org/10.7717/peerj.16125 PubMed 37780374

September 1, 2023

Microbial signature profiles of Penaeus vannamei larvae in low-survival hatchery tanks affected by vibriosis

Guillermo Reyes, Betsy Andrade, Irma Betancourt, Fanny Panchana, Ramiro Solórzano, Cristhian Preciado, Lita Sorroza, Luis E. Trujillo, Bonny Bayot

https://doi.org/10.7717/peerj.15795 PubMed 37671363

September 26, 2023

Numbers of fish species, higher taxa, and phylogenetic similarity decrease with latitude and depth, and deep-sea assemblages are unique

Han-Yang Lin, Shane Wright, Mark John Costello

https://doi.org/10.7717/peerj.16116 PubMed 37780369