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September 2023

Table of Contents - PeerJ (Biology Articles)

September 29, 2023

Pathway2Targets: an open-source pathway-based approach to repurpose therapeutic drugs and prioritize human targets

Mauri Dobbs Spendlove, Trenton M. Gibson, Shaney McCain, Benjamin C. Stone, Tristan Gill, Brett E. Pickett

https://doi.org/10.7717/peerj.16088 PubMed 37790614

September 28, 2023

DisVar: an R library for identifying variants associated with diseases using large-scale personal genetic information

Khunanon Chanasongkhram, Kasikrit Damkliang, Unitsa Sangket

https://doi.org/10.7717/peerj.16086 PubMed 37790633

September 11, 2023

Identification of quality markers for Cyanotis arachnoidea and analysis of its physiological mechanism based on chemical pattern recognition, network pharmacology, and experimental validation

Jingnan Hu, Yu Feng, Baolin Li, Fengxia Wang, Qi Qian, Wei Tian, Liying Niu, Xinguo Wang

https://doi.org/10.7717/peerj.15948 PubMed 37719108

September 18, 2023

Comparative efficacy of intraoperative radiotherapy and external boost irradiation in early-stage breast cancer: a systematic review and meta-analysis

Jiaxin Liu, Xiaowei Shi, Zhenbo Niu, Cheng Qian

https://doi.org/10.7717/peerj.15949 PubMed 37744215

September 22, 2023

Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning

Harrison Ho, Mansi Chovatia, Rob Egan, Guifen He, Yuko Yoshinaga, Ivan Liachko, Ronan O’Malley, Zhong Wang

https://doi.org/10.7717/peerj.16129 PubMed 37753177

September 29, 2023

clrDV: a differential variability test for RNA-Seq data based on the skew-normal distribution

Hongxiang Li, Tsung Fei Khang

https://doi.org/10.7717/peerj.16126 PubMed 37790621

September 26, 2023

Comparative sequence analysis elucidates the evolutionary patterns of Yersinia pestis in New Mexico over thirty-two years

Mary E. Warren, Brett E. Pickett, Byron J. Adams, Crystal Villalva, Alyssa Applegate, Richard A. Robison

https://doi.org/10.7717/peerj.16007 PubMed 37780382

September 20, 2023

Modelling and analysis of the complement system signalling pathways: roles of C3, C5a and pro-inflammatory cytokines in SARS-CoV-2 infection

Didar Murad, Rehan Zafar Paracha, Muhammad Tariq Saeed, Jamil Ahmad, Ammar Mushtaq, Maleeha Humayun

https://doi.org/10.7717/peerj.15794 PubMed 37744234

September 15, 2023

DEVOUR: Deleterious Variants on Uncovered Regions in Whole-Exome Sequencing

Erdem Türk, Akif Ayaz, Ayhan Yüksek, Barış E. Süzek

https://doi.org/10.7717/peerj.16026 PubMed 37727687

September 26, 2023

Association detection between multiple traits and rare variants based on family data via a nonparametric method

Jinling Chi, Meijuan Xu, Xiaona Sheng, Ying Zhou

https://doi.org/10.7717/peerj.16040 PubMed 37780393

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