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May 2023

Table of Contents - PeerJ (Biology Articles)

May 9, 2023

Association between INHA gene polymorphisms and litter size in Hainan black goats

Zhengyu Bian, Kunpeng Li, Si Chen, Churiga Man, Fengyang Wang, Lianbin Li

https://doi.org/10.7717/peerj.15381 PubMed 37187517

May 9, 2023

¹H NMR fecal metabolic phenotyping of periductal fibrosis- and cholangiocarcinoma-specific metabotypes defining perturbation in gut microbial-host co-metabolism

Rujikorn Treeriya, Phuc N. Ho, Attapol Titapun, Poramate Klanrit, Manida Suksawat, Thanaporn Kulthawatsiri, Suphasarang Sirirattanakul, Watcharin Loilome, Nisana Namwat, Arporn Wangwiwatsin, Nittaya Chamadol, Narong Khuntikeo, Jutarop Phetcharaburanin

https://doi.org/10.7717/peerj.15386 PubMed 37187520

May 3, 2023

Dynamics of bacterial and archaeal communities during horse bedding and green waste composting

Vanessa Grenier, Emmanuel Gonzalez, Nicholas JB Brereton, Frederic E. Pitre

https://doi.org/10.7717/peerj.15239 PubMed 37159830

May 9, 2023

Comparison of the chloroplast genomes and phylogenomic analysis of Elaeocarpaceae

Yihui Wang, Yifei Xie, Jiayi Jin, Jinyue Li, Xiangdong Qiu, Yang Tong, Zhongyang Li, Zhixiang Zhang, Wenling Lai

https://doi.org/10.7717/peerj.15322 PubMed 37187516

May 26, 2023

The relationship between ethylene-induced autophagy and reactive oxygen species in Arabidopsis root cells during the early stages of waterlogging stress

Qiwei Zheng, Gege Li, Hongyan Wang, Zhuqing Zhou

https://doi.org/10.7717/peerj.15404 PubMed 37255589

May 11, 2023

Multi-omics analysis of pyroptosis regulation patterns and characterization of tumor microenvironment in patients with hepatocellular carcinoma

Bingbing Shang, Ruohan Wang, Haiyan Qiao, Xixi Zhao, Liang Wang, Shaoguang Sui

https://doi.org/10.7717/peerj.15340 PubMed 37193028

May 18, 2023

The Zoige pioneer plant Leymus secalinus has different endophytic bacterial community structures to adapt to environmental conditions

Yue Xia, Ruipeng He, Wanru Xu, Jie Zhang

https://doi.org/10.7717/peerj.15363 PubMed 37220526

May 8, 2023

Identifying liver metastasis-related hub genes in breast cancer and characterizing SPARCL1 as a potential prognostic biomarker

Mingkuan Chen, Wenfang Zheng, Lin Fang

https://doi.org/10.7717/peerj.15311 PubMed 37180578

May 18, 2023

Hyperoside alleviates doxorubicin-induced myocardial cells apoptosis by inhibiting the apoptosis signal-regulating kinase 1/p38 pathway

Lingxia Chen, Zhi Qin, Zhong-bao Ruan

https://doi.org/10.7717/peerj.15315 PubMed 37220525

May 31, 2023

Over-expression of CcMYB24, encoding a R2R3-MYB transcription factor from a high-leaf-number mutant of Cymbidium, increases the number of leaves in Arabidopsis

Gengyun Li, Longjie Cheng, Zhilin Li, Yiran Zhao, Yuying Wang

https://doi.org/10.7717/peerj.15490 PubMed 37273531

May 15, 2023

Characterisation of pellicle-forming ability in clinical carbapenem-resistant Acinetobacter baumannii

Heng Kang Ng, Suat Moi Puah, Cindy Shuan Ju Teh, Nuryana Idris, Kek Heng Chua

https://doi.org/10.7717/peerj.15304 PubMed 37214089

May 11, 2023

Tandem mass tag-based quantitative proteomic analysis identification of succinylation related proteins in pathogenesis of thoracic aortic aneurysm and aortic dissection

Yu Zhang, Hongwei Zhang, Haiyue Wang, Chenhao Wang, Peng Yang, Chen Lu, Yu Liu, Zhenyuan Xu, Yi Xie, Jia Hu

https://doi.org/10.7717/peerj.15258 PubMed 37193023

May 15, 2023

Chromosomal aberrations and prognostic analysis of secondary acute myeloid leukemia—a retrospective study

Mingzhu Song, Tun Zhang, Dongdong Yang, Hao Xiao, Huiping Wang, Qianling Ye, Zhimin Zhai

https://doi.org/10.7717/peerj.15333 PubMed 37214104

May 22, 2023

Determination of the affinity constants for phage display albumin-binding peptides

Yi-Feng Shi

https://doi.org/10.7717/peerj.15078 PubMed 37250708

May 24, 2023

minSNPs: an R package for the derivation of resolution-optimised SNP sets from microbial genomic data

Kian Soon Hoon, Deborah C. Holt, Sarah Auburn, Peter Shaw, Philip M. Giffard

https://doi.org/10.7717/peerj.15339 PubMed 37250706

May 9, 2023

Integrated analysis of lncRNAs, mRNAs, and TFs to identify network modules underlying diterpenoid biosynthesis in Salvia miltiorrhiza

Lin Wang, Peijin Zou, Fang Liu, Rui Liu, Zhu-Yun Yan, Xin Chen

https://doi.org/10.7717/peerj.15332 PubMed 37187524

May 9, 2023

A long non-coding RNA PelncRNA1 is involved in Phyllostachys edulis response to UV-B stress

Lu Yu, Yiqian Ding, Mingbing Zhou

https://doi.org/10.7717/peerj.15243 PubMed 37187514

May 11, 2023

The effect of FMT and vitamin C on immunity-related genes in antibiotic-induced dysbiosis in mice

Xiaorong Huang, Yv Zhang, Junsong Huang, Wenli Gao, Xie Yongfang, Chuisheng Zeng, Chao Gao

https://doi.org/10.7717/peerj.15356 PubMed 37193034

May 9, 2023

Prognostic significance of SH2D5 expression in lung adenocarcinoma and its relation to immune cell infiltration

Hao Zhou, Shengjun Li, Yuansheng Lin

https://doi.org/10.7717/peerj.15238 PubMed 37187527

May 5, 2023

Identification of key immune-related genes associated with LPS/D-GalN-induced acute liver failure in mice based on transcriptome sequencing

Ling Chen, Li Yuan, Jingle Yang, Yizhi Pan, Hong Wang

https://doi.org/10.7717/peerj.15241 PubMed 37168540

May 17, 2023

A new miniMOS tool kit capable of visualizing single copy insertion in C. elegans

Jiangyun Li, Yuang Qin, Chengchen Shen, Jun Zhang, Shasha Tu, Jingxuan Yang, Yu Wang, Ruyun Zhou, Kui Zhang, Jianping Chen, Wenxing Yang

https://doi.org/10.7717/peerj.15433 PubMed 37214099

May 9, 2023

Topological feature generation for link prediction in biological networks

Mustafa Temiz, Burcu Bakir-Gungor, Pınar Güner Şahan, Mustafa Coskun

https://doi.org/10.7717/peerj.15313 PubMed 37187525

May 19, 2023

A comparative analysis of small RNA sequencing data in tubers of purple potato and its red mutant reveals small RNA regulation in anthocyanin biosynthesis

Fang Liu, Peng Zhao, Guangxia Chen, Yongqiang Wang, Yuanjun Yang

https://doi.org/10.7717/peerj.15349 PubMed 37223121

May 4, 2023

Full-length transcriptome analysis of Zanthoxylum nitidum (Roxb.) DC.

Yanxia Zhu, Yanfen Huang, Kunhua Wei, Junnan Yu, Jianping Jiang

https://doi.org/10.7717/peerj.15321 PubMed 37163151

May 9, 2023

Epithelial to mesenchymal transition in mammary gland tissue fibrosis and insights into drug therapeutics

Mudasir Ahmad Syed, Basharat Bhat, Abiza Wali, Afnan Saleem, Lateef Ahmad Dar, Mudasir Bashir Gugjoo, Shakil Bhat, Sahar Saleem Bhat

https://doi.org/10.7717/peerj.15207 PubMed 37187521