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May 2023

Table of Contents - PeerJ (Biology Articles)

May 10, 2023

CPJSdraw: analysis and visualization of junction sites of chloroplast genomes

Huie Li, Qiqiang Guo, Lei Xu, Haidong Gao, Lei Liu, Xiangyang Zhou

https://doi.org/10.7717/peerj.15326 PubMed 37193025

May 4, 2023

Identification of ABF/AREB gene family in tomato (Solanum lycopersicum L.) and functional analysis of ABF/AREB in response to ABA and abiotic stresses

Xuejuan Pan, Chunlei Wang, Zesheng Liu, Rong Gao, Li Feng, Ailing Li, Kangding Yao, Weibiao Liao

https://doi.org/10.7717/peerj.15310 PubMed 37163152

May 1, 2023

Identification and analysis of differentially expressed trihelix genes in maize (Zea mays) under abiotic stresses

Dongbo Zhao, Fengju Gao, Peiyan Guan, Jiansheng Gao, Zhihui Guo, Jianjun Guo, Huini Cui, Yongjun Li, Guijun Zhang, Zhao Li, Lianghai Guo

https://doi.org/10.7717/peerj.15312 PubMed 37151290

May 16, 2023

Microbial biomarker detection in shrimp larvae rearing water as putative bio-surveillance proxies in shrimp aquaculture

Nolwenn Callac, Carolane Giraud, Viviane Boulo, Nelly Wabete, Dominique Pham

https://doi.org/10.7717/peerj.15201 PubMed 37214103

May 8, 2023

Comprehensive identification and expression analysis of CAMTA gene family in Phyllostachys edulis under abiotic stress

Ce Liu, Dingqin Tang

https://doi.org/10.7717/peerj.15358 PubMed 37180580

May 9, 2023

Genome-wide identification and characterization of abiotic stress responsive GRAS family genes in oat (Avena sativa)

Jing Pan, Qingping Zhou, Hui Wang, Youjun Chen, Zhiqiang Wang, Junchao Zhang

https://doi.org/10.7717/peerj.15370 PubMed 37187518

May 3, 2023

Genome-wide characterization of the xyloglucan endotransglucosylase/hydrolase gene family in Solanum lycopersicum L. and gene expression analysis in response to arbuscular mycorrhizal symbiosis

Luis G. Sarmiento-López, Maury Yanitze López-Espinoza, Marco Adán Juárez-Verdayes, Melina López-Meyer

https://doi.org/10.7717/peerj.15257 PubMed 37159836

May 8, 2023

LINC00106/RPS19BP1/p53 axis promotes the proliferation and migration of human prostate cancer cells

Lingxiang Lu, Zhen Tian, Jicheng Lu, Minjun Jiang, Jianchun Chen, Shuai Guo, Yuhua Huang

https://doi.org/10.7717/peerj.15232 PubMed 37180577

May 8, 2023

EIF4A3 serves as a prognostic and immunosuppressive microenvironment factor and inhibits cell apoptosis in bladder cancer

Bing Hu, Ru Chen, Ming Jiang, Situ Xiong, Xiaoqiang Liu, Bin Fu

https://doi.org/10.7717/peerj.15309 PubMed 37180585

May 25, 2023

Identifying C1QB, ITGAM, and ITGB2 as potential diagnostic candidate genes for diabetic nephropathy using bioinformatics analysis

Yongzheng Hu, Yani Yu, Hui Dong, Wei Jiang

https://doi.org/10.7717/peerj.15437 PubMed 37250717

May 16, 2023

Impact of mini-driver genes in the prognosis and tumor features of colorectal cancer samples: a novel perspective to support current biomarkers

Anthony Vladimir Campos Segura, Mariana Belén Velásquez Sotomayor, Ana Isabel Flor Gutiérrez Román, César Alexander Ortiz Rojas, Alexis Germán Murillo Carrasco

https://doi.org/10.7717/peerj.15410 PubMed 37214090

May 12, 2023

Transcriptomic and metabolomic analysis of autumn leaf color change in Fraxinus angustifolia

Yanlong Wang, Jinpeng Zhen, Xiaoyu Che, Kang Zhang, Guowei Zhang, Huijuan Yang, Jing Wen, Jinxin Wang, Jiming Wang, Bo He, Ailong Yu, Yanhui Li, Zhigang Wang

https://doi.org/10.7717/peerj.15319 PubMed 37197583

May 2, 2023

Illuminating the druggable genome through patent bioactivity data

Maria P. Magariños, Anna Gaulton, Eloy Félix, Tevfik Kiziloren, Ricardo Arcila, Tudor I. Oprea, Andrew R. Leach

https://doi.org/10.7717/peerj.15153 PubMed 37151295

May 31, 2023

Tolerogenic dendritic cell reporting: Has a minimum information model made a difference?

Ayesha Sahar, Ioana Nicorescu, Gabrielle Barran, Megan Paterson, Catharien M.U. Hilkens, Phillip Lord

https://doi.org/10.7717/peerj.15352 PubMed 37273539

May 22, 2023

Clinical significance of FBXO43 in hepatocellular carcinoma and its impact on tumor cell proliferation, migration and invasion

Rulan Ma, Wenbo Liu, Tuanhe Sun, Chengxue Dang, Kang Li

https://doi.org/10.7717/peerj.15373 PubMed 37250703

May 1, 2023

Novel immune cell infiltration-related biomarkers in atherosclerosis diagnosis

Ruoyu Dong, Jikuan Li, Guangwei Jiang, Ning Han, Yaochao Zhang, Xiaoming Shi

https://doi.org/10.7717/peerj.15341 PubMed 37151293

May 8, 2023

Identifying liver metastasis-related hub genes in breast cancer and characterizing SPARCL1 as a potential prognostic biomarker

Mingkuan Chen, Wenfang Zheng, Lin Fang

https://doi.org/10.7717/peerj.15311 PubMed 37180578

May 11, 2023

Tandem mass tag-based quantitative proteomic analysis identification of succinylation related proteins in pathogenesis of thoracic aortic aneurysm and aortic dissection

Yu Zhang, Hongwei Zhang, Haiyue Wang, Chenhao Wang, Peng Yang, Chen Lu, Yu Liu, Zhenyuan Xu, Yi Xie, Jia Hu

https://doi.org/10.7717/peerj.15258 PubMed 37193023

May 16, 2023

Identification of immune-related genes in acute myocardial infarction based on integrated bioinformatical methods and experimental verification

Jian Liu, Lu Chen, Xiang Zheng, Caixia Guo

https://doi.org/10.7717/peerj.15058 PubMed 37214088

May 24, 2023

minSNPs: an R package for the derivation of resolution-optimised SNP sets from microbial genomic data

Kian Soon Hoon, Deborah C. Holt, Sarah Auburn, Peter Shaw, Philip M. Giffard

https://doi.org/10.7717/peerj.15339 PubMed 37250706

May 9, 2023

Integrated analysis of lncRNAs, mRNAs, and TFs to identify network modules underlying diterpenoid biosynthesis in Salvia miltiorrhiza

Lin Wang, Peijin Zou, Fang Liu, Rui Liu, Zhu-Yun Yan, Xin Chen

https://doi.org/10.7717/peerj.15332 PubMed 37187524

May 11, 2023

The effect of FMT and vitamin C on immunity-related genes in antibiotic-induced dysbiosis in mice

Xiaorong Huang, Yv Zhang, Junsong Huang, Wenli Gao, Xie Yongfang, Chuisheng Zeng, Chao Gao

https://doi.org/10.7717/peerj.15356 PubMed 37193034

May 18, 2023

GC-MS-based untargeted metabolic profiling of malignant mesothelioma plasma

Ding Wang, Jing Zhu, Na Li, Hongyang Lu, Yun Gao, Lei Zhuang, Zhongjian Chen, Weimin Mao

https://doi.org/10.7717/peerj.15302 PubMed 37220527

May 9, 2023

Prognostic significance of SH2D5 expression in lung adenocarcinoma and its relation to immune cell infiltration

Hao Zhou, Shengjun Li, Yuansheng Lin

https://doi.org/10.7717/peerj.15238 PubMed 37187527

May 5, 2023

Identification of key immune-related genes associated with LPS/D-GalN-induced acute liver failure in mice based on transcriptome sequencing

Ling Chen, Li Yuan, Jingle Yang, Yizhi Pan, Hong Wang

https://doi.org/10.7717/peerj.15241 PubMed 37168540

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