Biology & Life sciences - Table of Contents

February 3, 2023

Comparative chloroplast genome analyses of diverse Phoebe (Lauraceae) species endemic to China provide insight into their phylogeographical origin

Wenbo Shi, Weicai Song, Zimeng Chen, Haohong Cai, Qin Gong, Jin Liu, Chao Shi, Shuo Wang

https://doi.org/10.7717/peerj.14573 PubMed 36755871

February 8, 2023

A novel gene signature related to oxidative stress predicts the prognosis in clear cell renal cell carcinoma

Sheng Ma, Yue Ge, Zezhong Xiong, Yanan Wang, Le Li, Zheng Chao, Beining Li, Junbiao Zhang, Siquan Ma, Jun Xiao, Bo Liu, Zhihua Wang

https://doi.org/10.7717/peerj.14784 PubMed 36785707

February 7, 2023

Bioinformatic prediction of the molecular links between Alzheimer’s disease and diabetes mellitus

Ricardo Castillo-Velázquez, Flavio Martínez-Morales, Julio E. Castañeda-Delgado, Mariana H. García-Hernández, Verónica Herrera-Mayorga, Francisco A. Paredes-Sánchez, Gildardo Rivera, Bruno Rivas-Santiago, Edgar E. Lara-Ramírez

https://doi.org/10.7717/peerj.14738 PubMed 36778155

February 2, 2023

Differential gene expression analysis and physiological response characteristics of passion fruit (Passiflora edulis) buds under high-temperature stress

Hongli Wang, Jiucheng Zhao, Miao Lai, Yingqing Zhang, Wenwu Qiu, Yanyan Li, Hailian Tu, Qichang Ling, Xinfeng Fu

https://doi.org/10.7717/peerj.14839 PubMed 36751639

February 13, 2023

Genome-wide identification and analysis of the evolution and expression pattern of the HVA22 gene family in three wild species of tomatoes

LaiPeng Zhao, Baike Wang, Tao Yang, Huizhuan Yan, Qinghui Yu, Juan Wang

https://doi.org/10.7717/peerj.14844 PubMed 36815985

February 27, 2023

PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices

Alexander Lachmann, Kaeli A. Rizzo, Alon Bartal, Minji Jeon, Daniel J. B. Clarke, Avi Ma’ayan

https://doi.org/10.7717/peerj.14927 PubMed 36874981

February 24, 2023

Comprehensive study of rice YABBY gene family: evolution, expression and interacting proteins analysis

Ting Zhang, Anqi Wu, Xiaosong Hu, Qiyu Deng, Ziyi Ma, Lina Su

https://doi.org/10.7717/peerj.14783 PubMed 36860761

February 7, 2023

The imbalance of liver resident macrophages polarization promotes chronic autoimmune hepatitis development in mice

Gang Chi, Jinhong Pei, Xueqing Li

https://doi.org/10.7717/peerj.14871 PubMed 36778150

February 27, 2023

Differential lncRNA/mRNA expression profiling and ceRNA network analyses in amniotic fluid from foetuses with ventricular septal defects

Huaming Wang, Xi Lin, Zecheng Wang, Shaozheng He, Bingtian Dong, Guorong Lyu

https://doi.org/10.7717/peerj.14962 PubMed 36874970

February 3, 2023

Integrating multi-type aberrations from DNA and RNA through dynamic mapping gene space for subtype-specific breast cancer driver discovery

Jianing Xi, Zhen Deng, Yang Liu, Qian Wang, Wen Shi

https://doi.org/10.7717/peerj.14843 PubMed 36755866

February 8, 2023

Complet+: a computationally scalable method to improve completeness of large-scale protein sequence clustering

Rachel Nguyen, Bahrad A. Sokhansanj, Robi Polikar, Gail L. Rosen

https://doi.org/10.7717/peerj.14779 PubMed 36785708

February 6, 2023

Construction and validation of a fatty acid metabolism-related gene signature for predicting prognosis and therapeutic response in patients with prostate cancer

Hongjun Zhao, Tong Wu, Zehao Luo, Qinyao Huang, Sihua Zhu, Chunling Li, Zubing Zhang, Jiahao Zhang, Jianwen Zeng, Yuying Zhang

https://doi.org/10.7717/peerj.14854 PubMed 36778142

February 20, 2023

Five copper homeostasis gene clusters encode the Cu-efflux resistome of the highly copper-tolerant Methylorubrum extorquens AM1

Araceli Dávalos, Alejandro García-de los Santos

https://doi.org/10.7717/peerj.14925 PubMed 36846457

February 9, 2023

Bioinformatics prediction and experimental verification of a novel microRNA for myocardial fibrosis after myocardial infarction in rats

Qianqian Guo, Dandan Wu, Dongdong Jia, Xinyue Zhang, Aiming Wu, Lixia Lou, Mingjing Zhao, Mengzhu Zhao, Yijie Gao, Manman Wang, Menghua Liu, Meng Chen, Dongmei Zhang

https://doi.org/10.7717/peerj.14851 PubMed 36788811

February 3, 2023

Data processing choices can affect findings in differential methylation analyses: an investigation using data from the LIMIT RCT

Jennie Louise, Andrea R. Deussen, Jodie M. Dodd

https://doi.org/10.7717/peerj.14786 PubMed 36755865

February 24, 2023

Quantitative evaluations of variations using the population mean as a baseline for bioinformatics interpretation

Liu Hui

https://doi.org/10.7717/peerj.14955 PubMed 36860762

February 10, 2023

Abnormal expression of SLIT3 induces intravillous vascularization dysplasia in ectopic pregnancy

Qian Zhu, Xiaoya Zhao, Duo Zhang, Wei Xia, Jian Zhang