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September 2022

Table of Contents - PeerJ (Biology Articles)

September 22, 2022

BMSC-derived exosomal miR-27a-3p and miR-196b-5p regulate bone remodeling in ovariectomized rats

Guohua Lai, Renli Zhao, Weida Zhuang, Zuoxu Hou, Zefeng Yang, Peipei He, Jiachang Wu, Hongxun Sang

https://doi.org/10.7717/peerj.13744 PubMed 36168439

September 15, 2022

CAV1 alleviated CaOx stones formation via suppressing autophagy-dependent ferroptosis

Yuanyuan Yang, Senyuan Hong, Yuchao Lu, Qing Wang, Shaogang Wang, Yang Xun

https://doi.org/10.7717/peerj.14033 PubMed 36128191

September 20, 2022

Bioinformatics prediction and experimental verification of key biomarkers for diabetic kidney disease based on transcriptome sequencing in mice

Jing Zhao, Kaiying He, Hongxuan Du, Guohua Wei, Yuejia Wen, Jiaqi Wang, Xiaochun Zhou, Jianqin Wang

https://doi.org/10.7717/peerj.13932 PubMed 36157062

September 13, 2022

Screening of potential key ferroptosis-related genes in sepsis

Shunan Cui, Kun Niu, Yining Xie, Shuo Li, Wenzhi Zhu, Ling Yu, Hongyu Tan

https://doi.org/10.7717/peerj.13983 PubMed 36117534

September 5, 2022

Benchmark datasets for SARS-CoV-2 surveillance bioinformatics

Lingzi Xiaoli, Jill V. Hagey, Daniel J. Park, Christopher A. Gulvik, Erin L. Young, Nabil-Fareed Alikhan, Adrian Lawsin, Norman Hassell, Kristen Knipe, Kelly F. Oakeson, Adam C. Retchless, Migun Shakya, Chien-Chi Lo, Patrick Chain, Andrew J. Page, Benjamin J. Metcalf, Michelle Su, Jessica Rowell, Eshaw Vidyaprakash, Clinton R. Paden, Andrew D. Huang, Dawn Roellig, Ketan Patel, Kathryn Winglee, Michael R. Weigand, Lee S. Katz

https://doi.org/10.7717/peerj.13821 PubMed 36093336

September 28, 2022

A novel alkane monooxygenase (alkB) clade revealed by massive genomic survey and its dissemination association with IS elements

Shaojing Wang, Guoqiang Li, Zitong Liao, Tongtong Liu, Ting Ma

https://doi.org/10.7717/peerj.14147 PubMed 36193440

September 23, 2022

Utilizing network pharmacology and experimental validation to investigate the underlying mechanism of phellodendrine on inflammation

Lili Hu, Jue Wang, Na Wu, Xiaoge Zhao, Donghui Cai

https://doi.org/10.7717/peerj.13852 PubMed 36172495

September 9, 2022

Genome-wide identification of the trehalose-6-phosphate synthase gene family in sweet orange (Citrus sinensis) and expression analysis in response to phytohormones and abiotic stresses

Kehong Liu, Yan Zhou

https://doi.org/10.7717/peerj.13934 PubMed 36105645

September 15, 2022

Transcriptomic analysis and physiological characteristics of exogenous naphthylacetic acid application to regulate the healing process of oriental melon grafted onto squash

Chuanqiang Xu, Fang Wu, Jieying Guo, Shuan Hou, Xiaofang Wu, Ying Xin

https://doi.org/10.7717/peerj.13980 PubMed 36128197

September 21, 2022

Identification and expression profile analysis of the SnRK2 gene family in cucumber

Zilong Wan, Shilei Luo, Zeyu Zhang, Zeci Liu, Yali Qiao, Xueqin Gao, Jihua Yu, Guobin Zhang

https://doi.org/10.7717/peerj.13994 PubMed 36164601

September 23, 2022

Dental caries as a risk factor for bacterial blood stream infection (BSI) in children undergoing hematopoietic cell transplantation (HCT)

Dawud Abduweli Uyghurturk, Ying Lu, Janelle Urata, Christopher C. Dvorak, Pamela Den Besten

https://doi.org/10.7717/peerj.14040 PubMed 36172496

September 22, 2022

Genome-wide identification, characterization and expression analysis of HAK genes and decoding their role in responding to potassium deficiency and abiotic stress in Medicago truncatula

Yanxue Zhao, Lei Wang, Pengcheng Zhao, Zhongjie Liu, Siyi Guo, Yang Li, Hao Liu

https://doi.org/10.7717/peerj.14034 PubMed 36168431

September 21, 2022

DDX17 modulates the expression and alternative splicing of genes involved in apoptosis and proliferation in lung adenocarcinoma cells

Cheng He, Gan Zhang, Yanhong Lu, Jingyue Zhou, Zixue Ren

https://doi.org/10.7717/peerj.13895 PubMed 36164607

September 23, 2022

16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis

Ke Zhang, Rongnan Lin, Yujun Chang, Qing Zhou, Zhi Zhang

https://doi.org/10.7717/peerj.14043 PubMed 36172503

September 6, 2022

Effects of continuous and rotational cropping practices on soil fungal communities in pineapple cultivation

Jing Chen, Hui Zeng

https://doi.org/10.7717/peerj.13937 PubMed 36093333

September 28, 2022

Genome-wide identification and transcriptional profiling of the basic helix-loop-helix gene family in tung tree (Vernicia fordii)

Wenjuan Liu, Yaqi Yi, Jingyi Zhuang, Chang Ge, Yunpeng Cao, Lin Zhang, Meilan Liu

https://doi.org/10.7717/peerj.13981 PubMed 36193421

September 20, 2022

Context dependent prediction in DNA sequence using neural networks

Christian Grønbæk, Yuhu Liang, Desmond Elliott, Anders Krogh

https://doi.org/10.7717/peerj.13666 PubMed 36157058

September 30, 2022

An in silico study of how histone tail conformation affects the binding affinity of ING family proteins

Nadir Gül, Ahmet Yıldız

https://doi.org/10.7717/peerj.14029 PubMed 36199288

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