Biology & Life sciences - Table of Contents

July 5, 2022

Telomere-to-telomere genome assembly of Phaeodactylum tricornutum

Daniel J. Giguere, Alexander T. Bahcheli, Samuel S. Slattery, Rushali R. Patel, Tyler S. Browne, Martin Flatley, Bogumil J. Karas, David R. Edgell, Gregory B. Gloor

https://doi.org/10.7717/peerj.13607 PubMed 35811822

July 21, 2022

FastANI, Mash and Dashing equally differentiate between Klebsiella species

Julie E. Hernández-Salmerón, Gabriel Moreno-Hagelsieb

https://doi.org/10.7717/peerj.13784 PubMed 35891643

July 15, 2022

Muscone improves hypoxia/reoxygenation (H/R)-induced neuronal injury by blocking HMGB1/TLR4/NF-κB pathway via modulating microRNA-142

Weihua Ren, Fucheng Zhao, Yanru Han, Zhenzhou Liu, Jianli Zhai, Kui Jia

https://doi.org/10.7717/peerj.13523 PubMed 35860039

July 7, 2022

Wikidata and the bibliography of life

Roderic D. M. Page

https://doi.org/10.7717/peerj.13712 PubMed 35821898

July 14, 2022

ZmIAA5 regulates maize root growth and development by interacting with ZmARF5 under the specific binding of ZmTCP15/16/17

Feiyang Yang, Yutian Shi, Manli Zhao, Beijiu Cheng, Xiaoyu Li

https://doi.org/10.7717/peerj.13710 PubMed 35855434

July 4, 2022

Characterization of the WRKY gene family reveals its contribution to the adaptability of almond (Prunus dulcis)

Zhenfan Yu, Dongdong Zhang, Bin Zeng, Xingyue Liu, Jiahui Yang, Wenwen Gao, Xintong Ma

https://doi.org/10.7717/peerj.13491 PubMed 35811825

July 12, 2022

Comparative full-length transcriptome analysis by Oxford Nanopore Technologies reveals genes involved in anthocyanin accumulation in storage roots of sweet potatoes (Ipomoea batatas L.)

Jun Xiong, Xiuhua Tang, Minzheng Wei, Wenjin Yu

https://doi.org/10.7717/peerj.13688 PubMed 35846886

July 22, 2022

Genome-wide identification and expression pattern analysis of lipoxygenase gene family in turnip (Brassica rapa L. subsp. rapa)

Cunyao Yan, Kai Jia, Jing Zhang, Zhonglin Xiao, Xiaomei Sha, Jie Gao, Huizhuan Yan

https://doi.org/10.7717/peerj.13746 PubMed 35898937

July 11, 2022

GABRP promotes CD44s-mediated gemcitabine resistance in pancreatic cancer

Chen Chen, Binfeng Wu, Mingge Wang, Jinghua Chen, Zhaohui Huang, Jin-Song Shi

https://doi.org/10.7717/peerj.12728 PubMed 35846884

July 18, 2022

Active ingredients and molecular targets of Taraxacum mongolicum against hepatocellular carcinoma: network pharmacology, molecular docking, and molecular dynamics simulation analysis

Yanfeng Zheng, Shaoxiu Ji, Xia Li, Quansheng Feng

https://doi.org/10.7717/peerj.13737 PubMed 35873910

July 20, 2022

Escherichia coli transcription factors of unknown function: sequence features and possible evolutionary relationships

Isabel Duarte-Velázquez, Javier de la Mora, Jorge Humberto Ramírez-Prado, Alondra Aguillón-Bárcenas, Fátima Tornero-Gutiérrez, Eugenia Cordero-Loreto, Fernando Anaya-Velázquez, Itzel Páramo-Pérez, Ángeles Rangel-Serrano, Sergio Rodrigo Muñoz-Carranza, Oscar Eduardo Romero-González, Luis Rafael Cardoso-Reyes, Ricardo Alberto Rodríguez-Ojeda, Héctor Manuel Mora-Montes, Naurú Idalia Vargas-Maya, Felipe Padilla-Vaca, Bernardo Franco

https://doi.org/10.7717/peerj.13772 PubMed 35880217

July 14, 2022

Novel lncRNAs with diagnostic or prognostic value screened out from breast cancer via bioinformatics analyses

Hongxian Wang, Lirong Shu, Nan Niu, Chenyang Zhao, Shuqi Lu, Yanhua Li, Huanyu Wang, Yao Liu, Tianhui Zou, Jiawei Zou, Xiaoqin Wu, Yun Wang

https://doi.org/10.7717/peerj.13641 PubMed 35855425

July 12, 2022

Downregulation of the enhancer of zeste homolog 1 transcriptional factor predicts poor prognosis of triple-negative breast cancer patients

Wei Peng, Wei Tang, Jian-Di Li, Rong-Quan He, Jia-Yuan Luo, Zu-Xuan Chen, Jiang-Hui Zeng, Xiao-Hua Hu, Jin-Cai Zhong, Yang Li, Fu-Chao Ma, Tian-Yi Xie, Su-Ning Huang, Lian-Ying Ge

https://doi.org/10.7717/peerj.13708 PubMed 35846880

July 1, 2022

Genome-wide identification and functional analysis of class III peroxidases in Gossypium hirsutum

Yi Chen, Jiajia Feng, Yunfang Qu, Jinlong Zhang, Li Zhang, Dong Liang, Yujie Yang, Jinling Huang

https://doi.org/10.7717/peerj.13635 PubMed 35795174

July 5, 2022

Amino acids profiling and transcriptomic data integration demonstrates the dynamic regulation of amino acids synthesis in the leaves of Cyclocarya paliurus

Zhaokui Du, Weida Lin, Jinxing Zhu, Junmin Li

https://doi.org/10.7717/peerj.13689 PubMed 35811808

July 4, 2022

Metabolome and transcriptome profiling reveal regulatory network and mechanism of flavonoid biosynthesis during color formation of Dioscorea cirrhosa L.

Lin Yan, Haijun Yang, Qiang Ye, Zhihua Huang, Hongying Zhou, Dafang Cui

https://doi.org/10.7717/peerj.13659 PubMed 35811818

July 25, 2022

Genome-wide identification of long non-coding (lncRNA) in Nilaparvata lugens’s adaptability to resistant rice

Wenjun Zha, Sanhe Li, Huashan Xu, Junxiao Chen, Kai Liu, Peide Li, Kai Liu, Guocai Yang, Zhijun Chen, Shaojie Shi, Lei Zhou, Aiqing You

https://doi.org/10.7717/peerj.13587 PubMed 35910769

July 29, 2022

LncRNA/miRNA/mRNA ceRNA network analysis in spinal cord injury rat with physical exercise therapy

Jiahuan Wu, Xiangzhe Li, Qinghua Wang, Sheng Wang, Wenhua He, Qinfeng Wu, Chuanming Dong

https://doi.org/10.7717/peerj.13783 PubMed 35923891

July 26, 2022

RNA-binding protein CELF6 modulates transcription and splicing levels of genes associated with tumorigenesis in lung cancer A549 cells

HuSai Ma, GuoWei Liu, Bin Yu, Joshua Wang, YaLi Qi, YiYing Kou, Ying Hu, ShunJun Wang, Fei Wang, Dong Chen

https://doi.org/10.7717/peerj.13800 PubMed 35910766

July 22, 2022

Analysis of microRNA expression profiles in exosomes derived from acute myeloid leukemia by p62 knockdown and effect on angiogenesis

Chuan Li, Xinyi Long, Peiqi Liang, Zhuogang Liu, Chen Wang, Rong Hu

https://doi.org/10.7717/peerj.13498 PubMed 35898936

July 6, 2022

Evaluation of potential anti-metastatic and antioxidative abilities of natural peptides derived from Tecoma stans (L.) Juss. ex Kunth in A549 cells

Sucheewin Krobthong, Yodying Yingchutrakul, Wattanapong Sittisaree, Tatpong Tulyananda, Pawitrabhorn Samutrtai, Kiattawee Choowongkomon, Udom Lao-On

https://doi.org/10.7717/peerj.13693 PubMed 35818360

July 5, 2022

Surface cysteine to serine substitutions in IL-18 reduce aggregation and enhance activity

Jirakrit Saetang, Niran Roongsawang, Surasak Sangkhathat, Supayang Piyawan Voravuthikunchai, Natnaree Sangkaew, Napat Prompat, Teerapol Srichana, Varomyalin Tipmanee

https://doi.org/10.7717/peerj.13626 PubMed 35811828

July 11, 2022

TBX3 regulates the transcription of VEGFA to promote osteoblasts proliferation and microvascular regeneration

Lichuang Wu, Chenxian Su, Chuanhua Yang, Jinxing Liu, Yiheng Ye

https://doi.org/10.7717/peerj.13722 PubMed 35846885

July 8, 2022

Multi-locus evaluation of gastrointestinal bacterial communities from Zalophus californianus pups in the Gulf of California, México

David Ramirez-Delgado, Francesco Cicala, Ricardo A. Gonzalez-Sanchez, Rosalia Avalos-Tellez, Elena Solana-Arellano, Alexei Licea-Navarro

https://doi.org/10.7717/peerj.13235 PubMed 35833012

July 25, 2022

Identifying DUSP-1 and FOSB as hub genes in immunoglobulin A nephropathy by WGCNA and DEG screening and validation

Wu Jianping, Xiaona Wei, Jiajia Li, Rui Zhang, Qianqian Han, Qiongqiong Yang