Biology & Life sciences - Table of Contents

March 21, 2022

Computational bioacoustics with deep learning: a review and roadmap

Dan Stowell

https://doi.org/10.7717/peerj.13152 PubMed 35341043

March 15, 2022

CIAlign: A highly customisable command line tool to clean, interpret and visualise multiple sequence alignments

Charlotte Tumescheit, Andrew E. Firth, Katherine Brown

https://doi.org/10.7717/peerj.12983 PubMed 35310163

March 21, 2022

An issue of concern: unique truncated ORF8 protein variants of SARS-CoV-2

Sk. Sarif Hassan, Vaishnavi Kodakandla, Elrashdy M. Redwan, Kenneth Lundstrom, Pabitra Pal Choudhury, Tarek Mohamed Abd El-Aziz, Kazuo Takayama, Ramesh Kandimalla, Amos Lal, Ángel Serrano-Aroca, Gajendra Kumar Azad, Alaa A.A. Aljabali, Giorgio Palù, Gaurav Chauhan, Parise Adadi, Murtaza Tambuwala, Adam M. Brufsky, Wagner Baetas-da-Cruz, Debmalya Barh, Vasco Azevedo, Nikolas G. Bazan, Bruno Silva Andrade, Raner José Santana Silva, Vladimir N. Uversky

https://doi.org/10.7717/peerj.13136 PubMed 35341060

March 18, 2022

High-performance pipeline for MutMap and QTL-seq

Yu Sugihara, Lester Young, Hiroki Yaegashi, Satoshi Natsume, Daniel J. Shea, Hiroki Takagi, Helen Booker, Hideki Innan, Ryohei Terauchi, Akira Abe

https://doi.org/10.7717/peerj.13170 PubMed 35321412

March 24, 2022

Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study

Yami Ommar Arizmendi Cárdenas, Samuel Neuenschwander, Anna-Sapfo Malaspinas

https://doi.org/10.7717/peerj.12784 PubMed 35356467

March 30, 2022

ExhauFS: exhaustive search-based feature selection for classification and survival regression

Stepan Nersisyan, Victor Novosad, Alexei Galatenko, Andrey Sokolov, Grigoriy Bokov, Alexander Konovalov, Dmitry Alekseev, Alexander Tonevitsky

https://doi.org/10.7717/peerj.13200 PubMed 35378930

March 21, 2022

Structural analysis of M1AP variants associated with severely impaired spermatogenesis causing male infertility

Umut Gerlevik, Mahmut Cerkez Ergoren, Osman Uğur Sezerman, Sehime Gulsun Temel

https://doi.org/10.7717/peerj.12947 PubMed 35341049

March 21, 2022

Chikungunya virus time course infection of human macrophages reveals intracellular signaling pathways relevant to repurposed therapeutics

Madison Gray, Israel Guerrero-Arguero, Antonio Solis-Leal, Richard A. Robison, Bradford K. Berges, Brett E. Pickett

https://doi.org/10.7717/peerj.13090 PubMed 35341048

March 22, 2022

E-Volve: understanding the impact of mutations in SARS-CoV-2 variants spike protein on antibodies and ACE2 affinity through patterns of chemical interactions at protein interfaces

Vitor Pimentel Dos Santos, André Rodrigues, Gabriel Dutra, Luana Bastos, Diego Mariano, José Gutembergue Mendonça, Yan Jerônimo Gomes Lobo, Eduardo Mendes, Giovana Maia, Karina dos Santos Machado, Adriano Velasque Werhli, Gerd Rocha, Leonardo Henrique França de Lima, Raquel de Melo-Minardi

https://doi.org/10.7717/peerj.13099 PubMed 35341044

March 23, 2022

A flexible and accurate method for electroencephalography rhythms extraction based on circulant singular spectrum analysis

Hai Hu, Zihang Pu, Peng Wang

https://doi.org/10.7717/peerj.13096 PubMed 35345585

March 14, 2022

PhosVarDeep: deep-learning based prediction of phospho-variants using sequence information

Xia Liu, Minghui Wang, Ao Li

https://doi.org/10.7717/peerj.12847 PubMed 35310161