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February 2022

Table of Contents - PeerJ (Biology Articles)

February 17, 2022

PCAtest: testing the statistical significance of Principal Component Analysis in R

Arley Camargo

https://doi.org/10.7717/peerj.12967 PubMed 35194531

February 23, 2022

Disentangling bias for non-destructive insect metabarcoding

Francesco Martoni, Alexander M. Piper, Brendan C. Rodoni, Mark J. Blacket

https://doi.org/10.7717/peerj.12981 PubMed 35228909

February 10, 2022

Genome-wide identification and expression analysis of serine hydroxymethyltransferase (SHMT) gene family in tomato (Solanum lycopersicum)

Zesheng Liu, Xuejuan Pan, Chunlei Wang, Fahong Yun, Dengjing Huang, Yandong Yao, Rong Gao, Fujin Ye, Xingjuan Liu, Weibiao Liao

https://doi.org/10.7717/peerj.12943 PubMed 35186505

February 21, 2022

Genome-wide identification and characterization of laccase family members in eggplant (Solanum melongena L.)

Faxiang Wan, Linqing Zhang, Mengying Tan, Xiaohua Wang, Guang-Long Wang, Mengru Qi, Bingxin Liu, Jun Gao, Yu Pan, Yongqing Wang

https://doi.org/10.7717/peerj.12922 PubMed 35223206

February 8, 2022

Cathepsin S are involved in human carotid atherosclerotic disease progression, mainly by mediating phagosomes: bioinformatics and in vivo and vitro experiments

Hailong Wang, Haiying Jiang, Xian Wu Cheng

https://doi.org/10.7717/peerj.12846 PubMed 35186462

February 1, 2022

BIRC5 promotes cancer progression and predicts prognosis in laryngeal squamous cell carcinoma

Nan Wang, Xuanyu Huang, Jinsheng Cheng

https://doi.org/10.7717/peerj.12871 PubMed 35178302

February 8, 2022

Genome-wide identification and functional characterization of CDPK gene family reveal their involvement in response to drought stress in Gossypium barbadense

Guangzhen Shi, Xinxia Zhu

https://doi.org/10.7717/peerj.12883 PubMed 35186477

February 1, 2022

Unearthing soil arthropod diversity through DNA metabarcoding

Monica R. Young, Paul D. N. Hebert

https://doi.org/10.7717/peerj.12845 PubMed 35178296

February 3, 2022

Identification and expression profiles of the YABBY transcription factors in wheat

Lidong Hao, Jinshan Zhang, Shubing Shi, Peng Li, Dandan Li, Tianjiao Zhang, Haibin Guo

https://doi.org/10.7717/peerj.12855 PubMed 35186463

February 15, 2022

Wei2GO: weighted sequence similarity-based protein function prediction

Maarten J.M.F. Reijnders

https://doi.org/10.7717/peerj.12931 PubMed 35186498

February 15, 2022

Exploring the mechanism of cordycepin combined with doxorubicin in treating glioblastoma based on network pharmacology and biological verification

Jing Chen, Yuan-Dong Zhuang, Qiang Zhang, Shuang Liu, Bing-Bo Zhuang, Chun-Hua Wang, Ri-Sheng Liang

https://doi.org/10.7717/peerj.12942 PubMed 35186504

February 8, 2022

Antiviral drug discovery by targeting the SARS-CoV-2 polyprotein processing by inhibition of the main protease

Mahmoud Kandeel, Jinsoo Kim, Mahmoud Fayez, Yukio Kitade, Hyung-Joo Kwon

https://doi.org/10.7717/peerj.12929 PubMed 35186496

February 2, 2022

Transcriptome analysis reveals the potential biological function of FSCN1 in HeLa cervical cancer cells

Fengqin Guo, Yanliang Liu, Yanxiang Cheng, Qifan Zhang, Weili Quan, Yaxun Wei, Li Hong

https://doi.org/10.7717/peerj.12909 PubMed 35178306

February 22, 2022

SMRT sequencing of full-length transcriptome and gene expression analysis in two chemical types of Pogostemon cablin (Blanco) Benth.

Hongyi Zhang, Wenjing Deng, Changhua Lu, Mengling He, Hanjing Yan

https://doi.org/10.7717/peerj.12940 PubMed 35223208

February 22, 2022

Comparative transcriptomes of three different skin sites for the Asiatic toad (Bufo gargarizans)

Yue Lan, Lewei He, Xue Dong, Ruixiang Tang, Wanyu Li, Jiao Wang, Lei Wang, Bisong Yue, Megan Price, Tao Guo, Zhenxin Fan

https://doi.org/10.7717/peerj.12993 PubMed 35223212

February 9, 2022

Autophagy-related prognostic signature for survival prediction of triple negative breast cancer

Qiong Yang, Kewang Sun, Wenjie Xia, Ying Li, Miaochun Zhong, Kefeng Lei

https://doi.org/10.7717/peerj.12878 PubMed 35186475

February 17, 2022

Molecular characterization and expression profiling of transformer 2 and fruitless-like homologs in the black tiger shrimp, Penaeus monodon

Prawporn Thaijongrak, Charoonroj Chotwiwatthanakun, Phaivit Laphyai, Anuphap Prachumwat, Thanapong Kruangkum, Prasert Sobhon, Rapeepun Vanichviriyakit

https://doi.org/10.7717/peerj.12980 PubMed 35194532

February 24, 2022

Comparative transcriptomics analysis of contrasting varieties of Eucalyptus camaldulensis reveals wind resistance genes

Xiuhua Shang, Peijian Zhang, Guo Liu, Ni Zhan, Zhihua Wu

https://doi.org/10.7717/peerj.12954 PubMed 35233295

February 22, 2022

Functional network motifs defined through integration of protein-protein and genetic interactions

Amruta Sahoo, Sebastian Pechmann

https://doi.org/10.7717/peerj.13016 PubMed 35223214

February 16, 2022

Evidence of episodic positive selection in Corynebacterium diphtheriae complex of species and its implementations in identification of drug and vaccine targets

Marcus Vinicius Canário Viana, Rodrigo Profeta, Janaína Canário Cerqueira, Alice Rebecca Wattam, Debmalya Barh, Artur Silva, Vasco Azevedo

https://doi.org/10.7717/peerj.12662 PubMed 35190783

February 22, 2022

Antifungal activity of an artificial peptide aptamer SNP-D4 against Fusarium oxysporum

Junjun Huang, Dan Wang, Hong Li, Yanqiong Tang, Xiang Ma, Hongqian Tang, Min Lin, Zhu Liu

https://doi.org/10.7717/peerj.12756 PubMed 35223198

February 25, 2022

Comparative transcriptome analysis of miRNA in hydronephrosis male children caused by ureteropelvic junction obstruction with or without renal functional injury

Ge Liu, Xin Liu, Yi Yang

https://doi.org/10.7717/peerj.12962 PubMed 35237468

February 15, 2022

A new phylogenetic data standard for computable clade definitions: the Phyloreference Exchange Format (Phyx)

Gaurav Vaidya, Nico Cellinese, Hilmar Lapp

https://doi.org/10.7717/peerj.12618 PubMed 35186448

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