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September 2021

Table of Contents - PeerJ (Biology Articles)

September 17, 2021

Exosomal hsa-miR-21-5p is a biomarker for breast cancer diagnosis

Min Liu, Fei Mo, Xiaohan Song, Yun He, Yan Yuan, Jiaoyan Yan, Ye Yang, Jian Huang, Shu Zhang

https://doi.org/10.7717/peerj.12147 PubMed 34616615

September 16, 2021

Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets

Nicholas D. Youngblut, Ruth E. Ley

https://doi.org/10.7717/peerj.12198 PubMed 34616633

September 13, 2021

Biogeography rather than substrate type determines bacterial colonization dynamics of marine plastics

Ashley K. Coons, Kathrin Busch, Mark Lenz, Ute Hentschel, Erik Borchert

https://doi.org/10.7717/peerj.12135 PubMed 34603853

September 7, 2021

Identification of immune related cells and crucial genes in the peripheral blood of ankylosing spondylitis by integrated bioinformatics analysis

Yang Zheng, Bingbing Cai, Conglin Ren, Haipeng Xu, Weibin Du, Yijiang Wu, Fu Lin, Helou Zhang, Renfu Quan

https://doi.org/10.7717/peerj.12125 PubMed 34589304

September 23, 2021

Comparative analysis of codon usage patterns in chloroplast genomes of five Miscanthus species and related species

Jiajing Sheng, Xuan She, Xiaoyu Liu, Jia Wang, Zhongli Hu

https://doi.org/10.7717/peerj.12173 PubMed 34631315

September 30, 2021

Highly comparable metabarcoding results from MGI-Tech and Illumina sequencing platforms

Sten Anslan, Vladimir Mikryukov, Kęstutis Armolaitis, Jelena Ankuda, Dagnija Lazdina, Kristaps Makovskis, Lars Vesterdal, Inger Kappel Schmidt, Leho Tedersoo

https://doi.org/10.7717/peerj.12254 PubMed 34703674

September 30, 2021

Blockchain for genomics and healthcare: a literature review, current status, classification and open issues

Beyhan Adanur Dedeturk, Ahmet Soran, Burcu Bakir-Gungor

https://doi.org/10.7717/peerj.12130 PubMed 34703661

September 3, 2021

Expression and prognosis of CDC45 in cervical cancer based on the GEO database

Zikang He, Xiaojin Wang, Zhiming Yang, Ying Jiang, Luhui Li, Xingyun Wang, Zheyao Song, Xiuli Wang, Jiahui Wan, Shijun Jiang, Naiwen Zhang, Rongjun Cui

https://doi.org/10.7717/peerj.12114 PubMed 34557356

September 13, 2021

Phylogenetic relationships of sucrose transporters (SUTs) in plants and genome-wide characterization of SUT genes in Orchidaceae reveal roles in floral organ development

Yunzhu Wang, Yue Chen, Qingzhen Wei, Hongjian Wan, Chongbo Sun

https://doi.org/10.7717/peerj.11961 PubMed 34603845

September 1, 2021

The bioinformatics and experimental analysis of AlkB family for prognosis and immune cell infiltration in hepatocellular carcinoma

Bi Peng, Yuanliang Yan, Zhijie Xu

https://doi.org/10.7717/peerj.12123 PubMed 34557360

September 16, 2021

DNMT family induces down-regulation of NDRG1 via DNA methylation and clinicopathological significance in gastric cancer

Xiaojing Chang, Jinguo Ma, Xiaoying Xue, Guohui Wang, Tianfang Yan, Linlin Su, Xuetao Han, Huandi Zhou, Liubing Hou

https://doi.org/10.7717/peerj.12146 PubMed 34616614

September 22, 2021

Transcriptome and structure analysis in root of Casuarina equisetifolia under NaCl treatment

Yujiao Wang, Jin Zhang, Zhenfei Qiu, Bingshan Zeng, Yong Zhang, Xiaoping Wang, Jun Chen, Chonglu Zhong, Rufang Deng, Chunjie Fan

https://doi.org/10.7717/peerj.12133 PubMed 34616610

September 15, 2021

Identification and characterization of expression profiles of neuropeptides and their GPCRs in the swimming crab, Portunus trituberculatus

Shisheng Tu, Rui Xu, Mengen Wang, Xi Xie, Chenchang Bao, Dongfa Zhu

https://doi.org/10.7717/peerj.12179 PubMed 34616625

September 1, 2021

To culture or not to culture: a snapshot of culture-dependent and culture-independent bacterial diversity from peanut rhizosphere

Ankit Hinsu, Ashvin Dumadiya, Anjali Joshi, Rohitkumar Kotadiya, Kavan Andharia, Prakash Koringa, Ramesh Kothari

https://doi.org/10.7717/peerj.12035 PubMed 34557347

September 15, 2021

The expansion and diversity of the CYP75 gene family in Vitaceae

Yang Xiao, Jun Wen, Ran Meng, Ying Meng, Qiang Zhou, Ze-Long Nie

https://doi.org/10.7717/peerj.12174 PubMed 34616623

September 15, 2021

Integrative bioinformatics and experimental analysis revealed down-regulated CDC42EP3 as a novel prognostic target for ovarian cancer and its roles in immune infiltration

Yuanliang Yan, Qiuju Liang, Zhijie Xu, Qiaoli Yi

https://doi.org/10.7717/peerj.12171 PubMed 34616622

September 6, 2021

Detection of spreader nodes in human-SARS-CoV protein-protein interaction network

Sovan Saha, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu

https://doi.org/10.7717/peerj.12117 PubMed 34567845

September 23, 2021

A four-gene prognostic signature for predicting the overall survival of patients with lung adenocarcinoma

Lei Liu, Huayu He, Yue Peng, Zhenlin Yang, Shugeng Gao

https://doi.org/10.7717/peerj.11911 PubMed 34631307

September 9, 2021

An artificial neural network for automated behavioral state classification in rats

Jacob G. Ellen, Michael B. Dash

https://doi.org/10.7717/peerj.12127 PubMed 34589305

September 6, 2021

Comprehensive analysis of abnormal expression, prognostic value and oncogenic role of the hub gene FN1 in pancreatic ductal adenocarcinoma via bioinformatic analysis and in vitro experiments

Xiaohua Lei, Guodong Chen, Jiangtao Li, Wu Wen, Jian Gong, Jie Fu

https://doi.org/10.7717/peerj.12141 PubMed 34567847

September 3, 2021

Clinicopathological value of long non-coding RNA profiles in gastrointestinal stromal tumor

Yan Zhao, Xinxin Liu, Keshuai Xiao, Liwen Wang, Yuping Li, Mingyun Kan, Zhiwei Jiang

https://doi.org/10.7717/peerj.11946 PubMed 34557343

September 8, 2021

Whole-genome comparative analysis at the lineage/sublineage level discloses relationships between Mycobacterium tuberculosis genotype and clinical phenotype

Andrea Monserrat Negrete-Paz, Gerardo Vázquez-Marrufo, Ma. Soledad Vázquez-Garcidueñas

https://doi.org/10.7717/peerj.12128 PubMed 34589306

September 21, 2021

Multiomics-based analyses of KPNA2 highlight its multiple potentials in hepatocellular carcinoma

Jinzhong Zhang, Xiuzhi Zhang, Lingxiao Wang, Chunyan Kang, Ningning Li, Zhefeng Xiao, Liping Dai

https://doi.org/10.7717/peerj.12197 PubMed 34616632

September 15, 2021

Novel ACE2 protein interactions relevant to COVID-19 predicted by evolutionary rate correlations

Austin A. Varela, Sammy Cheng, John H. Werren

https://doi.org/10.7717/peerj.12159 PubMed 34616619

September 13, 2021

Identification and validation of hub genes for diabetic retinopathy

Li Peng, Wei Ma, Qing Xie, Baihua Chen

https://doi.org/10.7717/peerj.12126 PubMed 34603851

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