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August 2021

Table of Contents - PeerJ (Biology Articles)

August 11, 2021

Genome-wide identification and characterization of the Lateral Organ Boundaries Domain (LBD) gene family in polyploid wheat and related species

Jun Xu, Ping Hu, Ye Tao, Puwen Song, Huanting Gao, Yuanyuan Guan

https://doi.org/10.7717/peerj.11811 PubMed 34447619

August 27, 2021

SC-JNMF: single-cell clustering integrating multiple quantification methods based on joint non-negative matrix factorization

Mikio Shiga, Shigeto Seno, Makoto Onizuka, Hideo Matsuda

https://doi.org/10.7717/peerj.12087 PubMed 34532161

August 17, 2021

Diverse methanogens, bacteria and tannase genes in the feces of the endangered volcano rabbit (Romerolagus diazi)

Leslie M. Montes-Carreto, José Luis Aguirre-Noyola, Itzel A. Solís-García, Jorge Ortega, Esperanza Martinez-Romero, José Antonio Guerrero

https://doi.org/10.7717/peerj.11942 PubMed 34458021

August 23, 2021

StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs

Kévin Da Silva, Nicolas Pons, Magali Berland, Florian Plaza Oñate, Mathieu Almeida, Pierre Peterlongo

https://doi.org/10.7717/peerj.11884 PubMed 34513324

August 3, 2021

DUSP12 regulates the tumorigenesis and prognosis of hepatocellular carcinoma

Gaoda Ju, Tianhao Zhou, Rui Zhang, Xiaozao Pan, Bing Xue, Sen Miao

https://doi.org/10.7717/peerj.11929 PubMed 34414037

August 19, 2021

The whole-genome and expression profile analysis of WRKY and RGAs in Dactylis glomerata showed that DG6C02319.1 and DgWRKYs may cooperate in the immunity against rust

Juncai Ren, Jialing Hu, Ailing Zhang, Shuping Ren, Tingting Jing, Xiaoshan Wang, Min Sun, Linkai Huang, Bing Zeng

https://doi.org/10.7717/peerj.11919 PubMed 34466285

August 25, 2021

Identifying transcript 5′ capped ends in Plasmodium falciparum

Philip J. Shaw, Jittima Piriyapongsa, Pavita Kaewprommal, Chayaphat Wongsombat, Chadapohn Chaosrikul, Krirkwit Teeravajanadet, Manon Boonbangyang, Chairat Uthaipibull, Sumalee Kamchonwongpaisan, Sissades Tongsima

https://doi.org/10.7717/peerj.11983 PubMed 34527439

August 5, 2021

Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery

Peng Han, Jiaqi Yue, Kangle Kong, Shan Hu, Peng Cao, Yu Deng, Fan Li, Bo Zhao

https://doi.org/10.7717/peerj.11923 PubMed 34430085

August 6, 2021

Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies

Jason W. Shapiro, Catherine Putonti

https://doi.org/10.7717/peerj.11950 PubMed 34434663

August 19, 2021

Assessment of metrics in next-generation sequencing experiments for use in core-genome multilocus sequence type

Yen-Yi Liu, Bo-Han Chen, Chih-Chieh Chen, Chien-Shun Chiou

https://doi.org/10.7717/peerj.11842 PubMed 34466283

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