Biology & Life sciences - Table of Contents

June 14, 2021

Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation

Akbar Adjie Pratama, Benjamin Bolduc, Ahmed A. Zayed, Zhi-Ping Zhong, Jiarong Guo, Dean R. Vik, Maria Consuelo Gazitúa, James M. Wainaina, Simon Roux, Matthew B. Sullivan

https://doi.org/10.7717/peerj.11447 PubMed 34178438

June 11, 2021

Development and validation of ferroptosis-related lncRNAs signature for hepatocellular carcinoma

Jiaying Liang, Yaofeng Zhi, Wenhui Deng, Weige Zhou, Xuejun Li, Zheyou Cai, Zhijian Zhu, Jinxiang Zeng, Wanlan Wu, Ying Dong, Jin Huang, Yuzhuo Zhang, Shichao Xu, Yixin Feng, Fuping Ding, Jin Zhang

https://doi.org/10.7717/peerj.11627 PubMed 34178478

June 30, 2021

Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms

Taylor Priest, Luis H. Orellana, Bruno Huettel, Bernhard M. Fuchs, Rudolf Amann

https://doi.org/10.7717/peerj.11721 PubMed 34249520

June 24, 2021

Genome-wide analysis, identification, evolution and genomic organization of dehydration responsive element-binding (DREB) gene family in Solanum tuberosum

Nida Mushtaq, Faiza Munir, Alvina Gul, Rabia Amir, Rehan Zafar Paracha

https://doi.org/10.7717/peerj.11647 PubMed 34221730

June 4, 2021

Computational-approach understanding the structure-function prophecy of Fibrinolytic Protease RFEA1 from Bacillus cereus RSA1

Chhavi Sharma, Arti Nigam, Rajni Singh

https://doi.org/10.7717/peerj.11570 PubMed 34141495

June 3, 2021

iTRAQ-based quantitative proteomic analysis of heat stress-induced mechanisms in pepper seedlings

Jing Wang, Chengliang Liang, Sha Yang, Jingshuang Song, Xuefeng Li, Xiongze Dai, Fei Wang, Niran Juntawong, Fangjun Tan, Xilu Zhang, Chunhai Jiao, Xuexiao Zou, Wenchao Chen

https://doi.org/10.7717/peerj.11509 PubMed 34141478

June 22, 2021

Characterization of auxin transporter AUX, PIN and PILS gene families in pineapple and evaluation of expression profiles during reproductive development and under abiotic stresses

Heming Zhao, Yan Maokai, Han Cheng, Mingliang Guo, Yanhui Liu, Lulu Wang, Shi Chao, Minqian Zhang, Linyi Lai, Yuan Qin

https://doi.org/10.7717/peerj.11410 PubMed 34221708

June 10, 2021

nCov2019: an R package for studying the COVID-19 coronavirus pandemic

Tianzhi Wu, Erqiang Hu, Xijin Ge, Guangchuang Yu

https://doi.org/10.7717/peerj.11421 PubMed 34178436

June 15, 2021

Genome-wide identification and characterization of UBP gene family in wheat (Triticum aestivum L.)

Miaoze Xu, Peng Jin, Tingting Liu, Shiqi Gao, Tianye Zhang, Fan Zhang, Xiaolei Han, Long He, Jianping Chen, Jian Yang

https://doi.org/10.7717/peerj.11594 PubMed 34178465

June 15, 2021

AlleleShift: an R package to predict and visualize population-level changes in allele frequencies in response to climate change

Roeland Kindt

https://doi.org/10.7717/peerj.11534 PubMed 34178449

June 29, 2021

Integrated mRNA-seq and miRNA-seq analysis of goat fibroblasts response to Brucella Melitensis strain M5-90

Baobao Li, Si Chen, Chengqiang Wang, Qiaoling Chen, Churiga Man, Qi An, Zhenxing Zhang, Zhiyong Liu, Li Du, Fengyang Wang

https://doi.org/10.7717/peerj.11679 PubMed 34249510

June 4, 2021

Shanliang Zhong, Zhenzhong Lin, Huanwen Chen, Ling Mao, Jifeng Feng, Siying Zhou

https://doi.org/10.7717/peerj.11561 PubMed 34141492

June 29, 2021

Forecasting the COVID-19 transmission in Italy based on the minimum spanning tree of dynamic region network

Min Dong, Xuhang Zhang, Kun Yang, Rui Liu, Pei Chen

https://doi.org/10.7717/peerj.11603 PubMed 34249495

June 1, 2021

High PHD Finger Protein 19 (PHF19) expression predicts poor prognosis in colorectal cancer: a retrospective study

Pengfei Li, Jie Sun, Yuanyuan Ruan, Lujun Song

https://doi.org/10.7717/peerj.11551 PubMed 34141488

June 30, 2021

Heterogeneity of gut microbial responses in healthy household dogs transitioning from an extruded to a mildly cooked diet

Jirayu Tanprasertsuk, Justin Shmalberg, Heather Maughan, Devon E. Tate, LeeAnn M. Perry, Aashish R. Jha, Ryan W. Honaker

https://doi.org/10.7717/peerj.11648 PubMed 34249503

June 14, 2021

Transcriptome analysis associated with polysaccharide synthesis and their antioxidant activity in Cyclocarya paliurus leaves of different developmental stages

Weida Lin, Huanwei Chen, Jianmei Wang, Yongli Zheng, Qiuwei Lu, Ziping Zhu, Na Li, Zexin Jin, Junmin Li, Hongfei Lu

https://doi.org/10.7717/peerj.11615 PubMed 34178473

June 15, 2021

Tropane alkaloids and terpenes synthase genes of Datura stramonium (Solanaceae)

Sabina Velázquez-Márquez, Iván M. De-la-Cruz, Rosalinda Tapia-López, Juan Núñez-Farfán

https://doi.org/10.7717/peerj.11466 PubMed 34178440

June 22, 2021

Potency of bisresorcinol from Heliciopsis terminalis on skin aging: in vitro bioactivities and molecular interactions

Charinrat Saechan, Uyen Hoang Nguyen, Zhichao Wang, Sachiko Sugimoto, Yoshi Yamano, Katsuyoshi Matsunami, Hideaki Otsuka, Giang Minh Phan, Viet Hung Pham, Varomyalin Tipmanee, Jasadee Kaewsrichan

https://doi.org/10.7717/peerj.11618 PubMed 34221723

June 17, 2021

A seven-lncRNA signature for predicting Ewing’s sarcoma

Zhihui Chen, Xinyu Wang, Guozhu Wang, Bin Xiao, Zhe Ma, Hongliang Huo, Weiwei Li

https://doi.org/10.7717/peerj.11599 PubMed 34178467

June 2, 2021

Involvement of plasminogen activator inhibitor-1 and its related molecules in atrial fibrosis in patients with atrial fibrillation