Biology & Life sciences - Table of Contents

December 4, 2020

Comparing multiple comparisons: practical guidance for choosing the best multiple comparisons test

Stephen Midway, Matthew Robertson, Shane Flinn, Michael Kaller

https://doi.org/10.7717/peerj.10387 PubMed 33335808

December 18, 2020

Macrel: antimicrobial peptide screening in genomes and metagenomes

Célio Dias Santos-Júnior, Shaojun Pan, Xing-Ming Zhao, Luis Pedro Coelho

https://doi.org/10.7717/peerj.10555 PubMed 33384902

December 22, 2020

BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis

Daniel Dimitrov, Quan Gu

https://doi.org/10.7717/peerj.10469 PubMed 33391870

December 21, 2020

Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia

Gunadi, Hendra Wibawa, Marcellus, Mohamad Saifudin Hakim, Edwin Widyanto Daniwijaya, Ludhang Pradipta Rizki, Endah Supriyati, Dwi Aris Agung Nugrahaningsih, Afiahayati, Siswanto, Kristy Iskandar, Nungki Anggorowati, Alvin Santoso Kalim, Dyah Ayu Puspitarani, Kemala Athollah, Eggi Arguni, Titik Nuryastuti, Tri Wibawa

https://doi.org/10.7717/peerj.10575 PubMed 33391880

December 7, 2020

Developing a machine learning model to identify protein–protein interaction hotspots to facilitate drug discovery

Rohit Nandakumar, Valentin Dinu

https://doi.org/10.7717/peerj.10381 PubMed 33354416

December 15, 2020

Genome-wide member identification, phylogeny and expression analysis of PEBP gene family in wheat and its progenitors

Lei Dong, Yue Lu, Shubing Liu

https://doi.org/10.7717/peerj.10483 PubMed 33362967

December 7, 2020

Recalibration of mapping quality scores in Illumina short-read alignments improves SNP detection results in low-coverage sequencing data

Eliot Cline, Nuttachat Wisittipanit, Tossapon Boongoen, Ekachai Chukeatirote, Darush Struss, Anant Eungwanichayapant

https://doi.org/10.7717/peerj.10501 PubMed 33354434

December 3, 2020

Comprehensive analysis of circRNA expression profiles and circRNA-associated competing endogenous RNA networks in IgA nephropathy

Haiyang Liu, Di Liu, Yexin Liu, Ming Xia, Yan Li, Mei Li, Hong Liu

https://doi.org/10.7717/peerj.10395 PubMed 33344076

December 4, 2020

Identification and characterization of critical genes associated with tamoxifen resistance in breast cancer

Kai Zhang, Kuikui Jiang, Ruoxi Hong, Fei Xu, Wen Xia, Ge Qin, Kaping Lee, Qiufan Zheng, Qianyi Lu, Qinglian Zhai, Shusen Wang

https://doi.org/10.7717/peerj.10468 PubMed 33335811

December 10, 2020

miR-21 is upregulated, promoting fibrosis and blocking G2/M in irradiated rat cardiac fibroblasts

Huan Guo, Xinke Zhao, Haixiang Su, Chengxu Ma, Kai Liu, Shanshan Kong, Kedan Liu, Haining Li, Juan Chang, Tao Wang, Hongyun Guo, Huiping Wei, Zhaoyuan Fu, Xinfang Lv, Yingdong Li

https://doi.org/10.7717/peerj.10502 PubMed 33354435

December 2, 2020

Identification of a six-gene metabolic signature predicting overall survival for patients with lung adenocarcinoma

Yubo Cao, Xiaomei Lu, Yue Li, Jia Fu, Hongyuan Li, Xiulin Li, Ziyou Chang, Sa Liu

https://doi.org/10.7717/peerj.10320 PubMed 33344071

December 2, 2020

Identification of significant genes signatures and prognostic biomarkers in cervical squamous carcinoma via bioinformatic data

Yunan He, Shunjie Hu, Jiaojiao Zhong, Anran Cheng, Nianchun Shan

https://doi.org/10.7717/peerj.10386 PubMed 33344075

December 16, 2020

Transcriptome profiling reveals Silibinin dose-dependent response network in non-small lung cancer cells

Jagan Mohan Kaipa, Vytaute Starkuviene, Holger Erfle, Roland Eils, Evgeny Gladilin